Locus 2631

Sequence ID X_DroMel_CAF1
Location 7,030,320 – 7,030,412
Length 92
Max. P 0.890274
window4313

overview

Window 3

Location 7,030,320 – 7,030,412
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 83.59
Mean single sequence MFE -17.20
Consensus MFE -15.27
Energy contribution -15.27
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.89
SVM decision value 0.96
SVM RNA-class probability 0.890274
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7030320 92 + 22224390
CUCUGUUUUUUUUAUUUUUGGUAUUUUGCUUCGUAUUUAUUUAUUCCUGUUGUGCUUUUUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU
...........................................(((((((....((((...((((....)))).))))...))))))).... ( -16.00)
>DroSec_CAF1 21862 72 + 1
CUCUGUUUUUU-------------------UCGUAUUUAUUUAUUCCUGUUGUGCUU-UUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU
...........-------------------.............(((((((....(((-((.((((....)))))))))...))))))).... ( -17.80)
>DroSim_CAF1 21023 72 + 1
CUCCGUUUUUU-------------------UCGUAUUUAUUUAUUCCUGUUGUGCUU-UUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU
...........-------------------.............(((((((....(((-((.((((....)))))))))...))))))).... ( -17.80)
>consensus
CUCUGUUUUUU___________________UCGUAUUUAUUUAUUCCUGUUGUGCUU_UUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU
...........................................(((((((....(((....((((....))))..)))...))))))).... (-15.27 = -15.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:40 2006