Locus 2630

Sequence ID X_DroMel_CAF1
Location 7,028,809 – 7,028,903
Length 94
Max. P 0.970953
window4312

overview

Window 2

Location 7,028,809 – 7,028,903
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 73.20
Mean single sequence MFE -14.91
Consensus MFE -11.92
Energy contribution -11.78
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.80
SVM decision value 1.67
SVM RNA-class probability 0.970953
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7028809 94 - 22224390
AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC-----GUCUCCCAGAAAAACCCCACCACCACC--CCCCUCCCCCCUU---C--
.......(((((((((.....))))))))).(((.(.((((((........))-----)))).)..)))................--.............---.-- ( -16.00)
>DroVir_CAF1 99385 89 - 1
AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUUCGCAAACGCUGUGCGGCCCGACGCGUUACCCAAC----------CCGC-CCCCCCCAA---CCCCG---CCA
.......(((((((((.....))))))))).....((....)).(.((((......(((.........----------.)))-.........---..)))---)). ( -15.43)
>DroSec_CAF1 20345 76 - 1
AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC-----GUCUCCCAGA---------------CC--CCCAU---UUUUU---U--
.......(((((((((.....))))))))).....(.((((((........))-----)))).)....---------------..--.....---.....---.-- ( -15.40)
>DroSim_CAF1 19526 76 - 1
AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC-----GUCUCCCAGA---------------CC--CCCAU---UUCUU---U--
.......(((((((((.....))))))))).....(.((((((........))-----)))).)....---------------..--.....---.....---.-- ( -15.40)
>DroEre_CAF1 20513 79 - 1
AUACAUGUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGAUAUGUGCCAC-----GUCUCCCAGA---------------CC--CCCUA---CUUUUUUUU--
.(((((((((((((((.....)))))))).....((....)))))))))....-----(((.....))---------------).--.....---.........-- ( -14.80)
>DroAna_CAF1 64894 76 - 1
AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACUCCAUGUGCCGG-----CUUCACCUUC---------------UC--CUCAU---CCUUU---C--
.......(((((((((.....)))))))))...(((((.(.....).)).)))-----..........---------------..--.....---.....---.-- ( -12.40)
>consensus
AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC_____GUCUCCCAGA_______________CC__CCCAU___CCCUU___C__
.......(((((((((.....)))))))))....((((.......))))......................................................... (-11.92 = -11.78 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:40 2006