Locus 2629

Sequence ID X_DroMel_CAF1
Location 7,021,252 – 7,021,350
Length 98
Max. P 0.990896
window4311

overview

Window 1

Location 7,021,252 – 7,021,350
Length 98
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 81.82
Mean single sequence MFE -32.32
Consensus MFE -20.02
Energy contribution -19.90
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -3.11
Structure conservation index 0.62
SVM decision value 2.24
SVM RNA-class probability 0.990896
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7021252 98 - 22224390
ACGCGAUGUCGAUACAG------AUACAGAUACAGCCAAAGAUACGGGUUCGAAUUCGGAUUGGGAUU------GGGAUUUGUAUUUGUAUUUGUAUUUUGGCUUUUCGA
...(((.((((((((((------(((((((((((.((...(((.(.((((((....)))))).).)))------.))...))))))))))))))))))..)))...))). ( -35.70)
>DroSec_CAF1 12933 86 - 1
ACGCGAUGUCGAUACAG------AUACAGAUACAGUCAAAGAUACGGCUUCGGAUUCGGAUU------------------GGGAUUUGUAUUUGUAUUUUGGCUUUUCGA
...(((.((((((((((------((((((((.(((((...((..((....))...)).))))------------------)..)))))))))))))))..)))...))). ( -28.40)
>DroSim_CAF1 12063 104 - 1
ACGCGAUGUCGAUACAG------AUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUGGGAUUGGGAUUGGGAUUGGGAUUUGUAUUUGUAUUUUGGCUUUUCGA
...(((.((((((((((------((((((((.(((((........)))(((.(((((.(((....))).))))).))).))..)))))))))))))))..)))...))). ( -32.70)
>DroEre_CAF1 13000 97 - 1
ACGCGAUGUCGAUACAGAAACAGAUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUCGGCUUGGGAC------------UUGUAUUUGUGU-UUGGCUUUUCGA
........((((...((...(((((((((((((((((.(((...((..((((....))))..)).))).)).)------------.)))))))))))-))).))..)))) ( -30.50)
>DroYak_CAF1 10700 109 - 1
ACGCGAUGUCGAUACAGAUACAGAUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUGGGAUUGGGAUUGGAAUUGGGUUUUGUAUUUGUAU-UUGGCUUUUCGA
........((((..((((((((((((((((..(((((........)))(((.(((((.(((....))).))))).))).))...)))))))))))))-))).....)))) ( -34.30)
>consensus
ACGCGAUGUCGAUACAG______AUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUGGGAUUGGGA__GG_AUUGGGAUUUGUAUUUGUAUUUUGGCUUUUCGA
...(((.(((((...........((((((((((((((........)))((((....))))..........................))))))))))).)))))...))). (-20.02 = -19.90 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:39 2006