Locus 2625

Sequence ID X_DroMel_CAF1
Location 7,006,836 – 7,006,941
Length 105
Max. P 0.734754
window4300

overview

Window 0

Location 7,006,836 – 7,006,941
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.47
Mean single sequence MFE -26.32
Consensus MFE -23.83
Energy contribution -23.95
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.91
SVM decision value 0.43
SVM RNA-class probability 0.734754
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7006836 105 - 22224390
---------------CCAGUCGUCCAAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACGCCCGGCAUAUC
---------------...((((....((((....)))).(((.....(((((((...(((.(((....((((..((....)).))))))).))).))))))).....))).))))..... ( -22.80)
>DroSec_CAF1 8070 105 - 1
---------------CCAGCCGUCCAAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACGCCCGGCAUAAC
---------------...((((....((((....)))).(((.....(((((((...(((.(((....((((..((....)).))))))).))).))))))).....))).))))..... ( -25.50)
>DroEre_CAF1 13921 109 - 1
CCUCC----------CCAGCCGUACGAGCAACAAUGUUCGCGAAA-AAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACCCCCGGCAUAUC
.....----------...((((..((((((....)))))).....-.(((((((...(((.(((....((((..((....)).))))))).))).))))))).........))))..... ( -27.00)
>DroYak_CAF1 22345 120 - 1
CCUCCACCCCCCCCUCCAGCCGGCCGAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACCCCCGGCAUUUC
..................((((((((((((....)))))).).....(((((((...(((.(((....((((..((....)).))))))).))).)))))))........)))))..... ( -30.00)
>consensus
_______________CCAGCCGUCCAAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACCCCCGGCAUAUC
..................((((..((((((....)))))).......(((((((...(((.(((....((((..((....)).))))))).))).))))))).........))))..... (-23.83 = -23.95 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:29 2006