Locus 2622

Sequence ID X_DroMel_CAF1
Location 7,005,532 – 7,005,652
Length 120
Max. P 0.704935
window4293

overview

Window 3

Location 7,005,532 – 7,005,652
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -28.68
Consensus MFE -25.77
Energy contribution -26.27
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.90
SVM decision value 0.36
SVM RNA-class probability 0.704935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7005532 120 - 22224390
GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGCCCAAACUCCAUUCAGCUGAUCUGCCAC
..(((....(((.(((((...............(((...........((....))....((....)).)))(..(((((........)))))..).............))))).)))))) ( -25.50)
>DroSec_CAF1 6787 118 - 1
GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGCCCAAGCUCCAUUCAGCUGAUCUGCC--
.........(((.(((((.............(((((...........)))))(((....((....))....(..(((((........)))))..)..)))........))))).))).-- ( -26.60)
>DroEre_CAF1 12592 120 - 1
GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGGCCAAACUCCUUCUAUCUGAUCUGCCAC
..(((....(((.((((((..............(((...........((....))....((....)).)))(.((((((........)))))).)............)))))).)))))) ( -30.10)
>DroYak_CAF1 20977 120 - 1
GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGGCCAAACUCCUUCCAGCUGAUAUGCCAC
..(((....(((((((((...............(((...........((....))....((....)).)))(.((((((........)))))).).............)))))))))))) ( -32.50)
>consensus
GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGCCCAAACUCCAUCCAGCUGAUCUGCCAC
.........(((.(((((...............(((...........((....))....((....)).)))(.((((((........)))))).).............))))).)))... (-25.77 = -26.27 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:23 2006