| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,004,824 – 7,004,941 |
| Length | 117 |
| Max. P | 0.998515 |
| Location | 7,004,824 – 7,004,941 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.15 |
| Mean single sequence MFE | -41.93 |
| Consensus MFE | -26.25 |
| Energy contribution | -29.37 |
| Covariance contribution | 3.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -4.63 |
| Structure conservation index | 0.63 |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.998515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7004824 117 - 22224390 GGAAUUUUCCUCGCUGGCAUGUGAGUGUGUGUGUGUGUGUGUUAGUAUAAGCGACGCCAUUGUGUAUCGUACAUGCGCACACACACA--UACAUAUGUG-GAAUCAACCACCCACACAUC (((....)))........(((((.((((((((((((((((((..((((..((((..(......)..))))..)))))))))))))))--)))))))(((-(......))))...))))). ( -45.40) >DroSec_CAF1 6135 111 - 1 GGAAUUUUCCUCGCUGCCAUGUG--UGUGU--CUGUGUGUGUUGGUAUAAGCGUCGCCAUUGUGUAUUGUACAUGCGCACACACAC----ACAUAUGUG-AAAUCAACCNNNNNNNNNNN (((....))).......((((((--(((((--.(((((((((..((((((....(((....)))..))))))..))))))))).))----)))))))))-.................... ( -36.00) >DroEre_CAF1 11921 110 - 1 GGAAUUUUCCUCGCUACCAUGUG--UGUGUGUGUGU--------GUAUAAGAGACGCCAUUGUGUAUUGUACAUGCGCACACACACACACACACAUGUGCGAAUCAACCACCCACACAUC (((....)))((((...((((((--(((((((((((--------((....(......)...((((((.....))))))))))))))))))))))))).)))).................. ( -44.40) >consensus GGAAUUUUCCUCGCUGCCAUGUG__UGUGUGUGUGUGUGUGUU_GUAUAAGCGACGCCAUUGUGUAUUGUACAUGCGCACACACACA___ACAUAUGUG_GAAUCAACCACCCACACAUC (((....))).......((((((..(((((((((((((((....((((((...((((....)))).)))))))))))))))))))))....))))))....................... (-26.25 = -29.37 + 3.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:22 2006