| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,004,264 – 7,004,381 |
| Length | 117 |
| Max. P | 0.907939 |
| Location | 7,004,264 – 7,004,381 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.42 |
| Mean single sequence MFE | -44.48 |
| Consensus MFE | -30.40 |
| Energy contribution | -32.72 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.907939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7004264 117 - 22224390 C---AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCUGCUGCGGCCUGUCUCUACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGGAAACUCGACGCUGCUCCCUGGC .---.....(((..((.(((.(((((.((((((..((((....).))).)))))).))))).))).....(((((((....((((....))))..((....)))))))))))..)))... ( -48.70) >DroSec_CAF1 5604 113 - 1 C---AAGAAAGGAUCCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCU---GCGGCCUGUCUCAACGAUGGCGUCGCAUCGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCCGU-GC .---.......((..((((.(((((((((..(((....)))..))))))---))).))))..)).(((....))).(((.(((.(((..((((..((....)).)))).))).))))-)) ( -45.90) >DroSim_CAF1 8622 113 - 1 C---AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCU---GCGGCCUGUCUCAACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCCAC-GC .---......(((.(((((((((((((((..(((....)))..))))))---((((((((((.....))))).)))))......))))).(((..((....)).))).)))))))..-.. ( -48.10) >DroEre_CAF1 11376 116 - 1 CAAGGAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGAAACAUCCU---GCGGCCUGUCUCCACGAUGGCGUCGCAAUGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCGGU-GC ..........(((.(((((.(((((((((...((.....))..))))))---))).))))).))).(((((((((((...(((((....))))).((....)))))))))).)))..-.. ( -50.70) >DroYak_CAF1 19814 92 - 1 C---GAAAAAGGAUGCAGCAUGCAACA----UCCUGGAGGCAACAUCCU---GCGGCCUGUCACUACGAUGGCGUCGCCACGGCGCAUUUGCCAAAGGAAAC------------------ .---.....((((((..(....)..))----))))...(....).((((---((((((((((.....))))).)))))...((((....))))..))))...------------------ ( -29.00) >consensus C___AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCU___GCGGCCUGUCUCAACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCCGU_GC ..........(((.((((...((((.((((.(((.((((....).)))....((((((((((.....))))).)))))...)))))))))))...((....)).....)))))))..... (-30.40 = -32.72 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006