Locus 2619

Sequence ID X_DroMel_CAF1
Location 7,003,387 – 7,003,501
Length 114
Max. P 0.500000
window4290

overview

Window 0

Location 7,003,387 – 7,003,501
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.37
Mean single sequence MFE -27.37
Consensus MFE -18.80
Energy contribution -18.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.97
Structure conservation index 0.69
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7003387 114 - 22224390
CCCUAUUCUUCCCCUUU--UUCCUUGAUUUUCUGCCGCUUGUUUU-CCUUC-GUUCUUAUCUCAUUUGGAAUUAUUUGCUUAAAUAGCAUGGAGAA-CAAGAGUCAGAGGAUG-AUACAA
.................--.....(.((((((((.(.((((((((-((...-(((((..........)))))....((((.....)))).))))))-)))).).)))))))).-)..... ( -27.00)
>DroSec_CAF1 4787 116 - 1
CCCUAUUCUUCCCCUUUUUUUUCUUGAUUUUCUGCCGCUUGUUUU-CCUUC-GUUCUUAUCUCAUUUGGAAUUAUUUGCUUAAAUAGCAUGGAGAA-CAAGAGUCAGAGGAUG-AUACAA
........................(.((((((((.(.((((((((-((...-(((((..........)))))....((((.....)))).))))))-)))).).)))))))).-)..... ( -27.00)
>DroEre_CAF1 10540 118 - 1
CUCUAUUCUUCCCCUUU--CUGCUUGAUUUUCUGCCGCUUGUUUUUCCAUCUUUUCUUAUCUCAUUUGGAAUGAUUUGCUUAAAUAGCAAGGAGAACCAAGAGUCAGAGGAUGAAUACAA
...(((((.(((....(--(.....))...((((.(.((((.(((((((((.((((...........)))).)))(((((.....))))))))))).)))).).))))))).)))))... ( -28.10)
>consensus
CCCUAUUCUUCCCCUUU__UUCCUUGAUUUUCUGCCGCUUGUUUU_CCUUC_GUUCUUAUCUCAUUUGGAAUUAUUUGCUUAAAUAGCAUGGAGAA_CAAGAGUCAGAGGAUG_AUACAA
..........................((((((((.(.((((.(((.((.....((((..........)))).....((((.....)))).)).))).)))).).))))))))........ (-18.80 = -18.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:20 2006