| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,001,641 – 7,001,757 |
| Length | 116 |
| Max. P | 0.858677 |
| Location | 7,001,641 – 7,001,757 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.60 |
| Mean single sequence MFE | -39.96 |
| Consensus MFE | -31.80 |
| Energy contribution | -32.24 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7001641 116 - 22224390 ---ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUCCAACUUGGACUCGAGUGGAUGCUCGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAACGCCGAA-A ---..((((..........)))).((((.((((((((..((....((((.((((....))))))))..))..)))))))).(((...(((((((.....))))))))))..))))...-. ( -37.30) >DroSec_CAF1 3075 116 - 1 ---ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGAUGCUUGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAUCGCCGAA-A ---.((....(((((((..(((....((.((((((((.(((....(.((.((((....)))))).)..))).))))))))))..)))(((((((.....)))))))))))))).))..-. ( -39.10) >DroSim_CAF1 6098 116 - 1 ---ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGAUGCUCGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAUCGCCGAA-A ---.((....(((((((..(((....((.((((((((...((.((....(((((....)))))....)))).))))))))))..)))(((((((.....)))))))))))))).))..-. ( -37.30) >DroEre_CAF1 8775 117 - 1 ---GCGUUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGCUGCUCGACACGCUGCGAUCUGGCAUCUAGAAUGUGGAUUCAUCAUCGUUGAACA ---..(((..(((((((..((.((((((.((((((((...((.((.((.(((((....))))).)).)))).)))))))))).)))).))....((((....)))))))))))...))). ( -44.30) >DroYak_CAF1 17519 119 - 1 ACAACACUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUCCAACUCGGACUCGAGUGGCUGCUCGACACGCUGCGAUCUGGAAUCUAAAAUGCGGAUUCAUCAGCAUCGAA-A .........((((((...((((((((((.((((((((...((.((.(((.((((....)))))))..)))).)))))))))).))))((((((.......)))))).)))))))))).-. ( -41.80) >consensus ___ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGAUGCUCGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAUCGCCGAA_A ..........(((((((...((....((.((((((((...((.((....(((((....)))))....)))).))))))))))..)).(((((((.....))))))))))))))....... (-31.80 = -32.24 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006