| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,998,385 – 6,998,499 |
| Length | 114 |
| Max. P | 0.522468 |
| Location | 6,998,385 – 6,998,499 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.43 |
| Mean single sequence MFE | -35.80 |
| Consensus MFE | -29.42 |
| Energy contribution | -29.87 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6998385 114 + 22224390 CCC---CCCCGC-UUUACACAGUAGUCUGCGUCUGCCAUUGCUGUCACUCCG-GCGAUAGACGAGUUCGGGCCAGAAUCUCGGCCCACACACACAAACGUGGAGUCCACAACCACUCA-A ...---....((-.((((...))))...))((((...(((((((......))-)))))))))((((..(((((........)))))............((((...))))....)))).-. ( -31.70) >DroSec_CAF1 20741 118 + 1 CCCCUUCCCCGCAUAUACACAGUAGUGUGCGUCUGCCAUUGCUGUCACUCCGGGCGAUAGACGACUUCGGGCCAGAAUCUCGGCCCACA--CACAAGCGUGGGGUCCACAACCACUCAAA ((((.((((((.......(((((((((.((....))))))))))).....)))).))...(((.(((.(((((........)))))...--...))))))))))................ ( -37.90) >DroSim_CAF1 6313 118 + 1 NNNNNNNNNNGCAUAUGCACAGUAGUGUGCGUCUGCCAUUGCUGUCACUCCG-GCGAUAGACGACUUCGGGCCAGAAUCUCGGCCCACACACACAAGCGUGGGGUCCACAACCACUCA-A ..........((....))...((.((((((((((...(((((((......))-)))))))))).....(((((........))))).)))))))..(.((((.........)))).).-. ( -37.80) >consensus CCC___CCCCGCAUAUACACAGUAGUGUGCGUCUGCCAUUGCUGUCACUCCG_GCGAUAGACGACUUCGGGCCAGAAUCUCGGCCCACACACACAAGCGUGGGGUCCACAACCACUCA_A ..................(((((((((.((....))))))))))).((((((.((((.........))(((((........)))))..........)).))))))............... (-29.42 = -29.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:14 2006