Locus 2613

Sequence ID X_DroMel_CAF1
Location 6,997,716 – 6,997,836
Length 120
Max. P 0.645707
window4283

overview

Window 3

Location 6,997,716 – 6,997,836
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -38.65
Consensus MFE -35.71
Energy contribution -35.60
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -1.76
Structure conservation index 0.92
SVM decision value 0.23
SVM RNA-class probability 0.645707
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6997716 120 + 22224390
CAUAUGGUUCGCGUCAUGGAAGCUGUACUGUAUAUACCUAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU
....((((..(((((((.(((((...(((((...((((((((........)))))))))))))...))))).).)))))).))))......(((((.((..((....))..)).))))). ( -38.20)
>DroSec_CAF1 20114 118 + 1
--AAUGGUUCGGGUUAUGGAAGCUGGACUGUAUAUACCCAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU
--...(((((((.((....)).)))))))((((((((((.(((((.......((((((.((((..((((......))))..)))).))))))........))))))).)))))))).... ( -38.46)
>DroSim_CAF1 5273 120 + 1
CAUGUGGUUCGGGUUAUGGAAGCUGGACUGUAUAUACCCAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU
.(((..((((((.((....)).))))))..))).....(((((.(((((((((((((((((((..((((......))))..))))....))...))))))))))))).)))))....... ( -39.30)
>consensus
CAUAUGGUUCGGGUUAUGGAAGCUGGACUGUAUAUACCCAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU
....((((..(.(((((.(((((.(((((((...((((((((........))))))))))))))).))))).).)))).).))))......(((((.((..((....))..)).))))). (-35.71 = -35.60 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:13 2006