Locus 2611

Sequence ID X_DroMel_CAF1
Location 6,997,113 – 6,997,233
Length 120
Max. P 0.678712
window4278

overview

Window 8

Location 6,997,113 – 6,997,233
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -36.70
Consensus MFE -36.92
Energy contribution -36.70
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.50
Structure conservation index 1.01
SVM decision value 0.30
SVM RNA-class probability 0.678712
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6997113 120 + 22224390
UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAGAGACAGAGAAAGAGA
.(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... ( -36.60)
>DroSec_CAF1 19424 120 + 1
UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAAAGACAGAGAAAGAGA
.(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... ( -36.90)
>DroSim_CAF1 4579 120 + 1
UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAGAGACAGAGAAAGAGA
.(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... ( -36.60)
>consensus
UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAGAGACAGAGAAAGAGA
.(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... (-36.92 = -36.70 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006