Locus 2607

Sequence ID X_DroMel_CAF1
Location 6,994,302 – 6,994,422
Length 120
Max. P 0.509902
window4268

overview

Window 8

Location 6,994,302 – 6,994,422
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.44
Mean single sequence MFE -24.27
Consensus MFE -19.40
Energy contribution -19.84
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.509902
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6994302 120 + 22224390
GUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUUUAGAAAUCAAAAAAAAAAAGUUCAUGCAUUUGUUGGCAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC
.....(((((((((((((((.((((.......................)))).)))))))((((...(((((((...)))))))(((((.....)))))))))...))))))))...... ( -25.10)
>DroSec_CAF1 16666 106 + 1
UUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUCACGAAAUCAAAC----AAAGUUCAUG----------CAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC
......((((((((((((((.((....)).)))))))))..)))))(----((((((....----------..)))))))....(((((.....)))))..(((.((((...)))).))) ( -23.60)
>DroSim_CAF1 1803 106 + 1
UUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUCACAAAAUCAAAC----AAAGUUCAUG----------CAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC
......((((((((((((((.((....)).))))))))..))))))(----((((((....----------..)))))))....(((((.....)))))..(((.((((...)))).))) ( -24.10)
>consensus
UUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUCACGAAAUCAAAC____AAAGUUCAUG__________CAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC
.....(((((((((((((((.((....)).)))))))................(((.((((..........(((((((....))))))).........)))).)))))))))))...... (-19.40 = -19.84 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006