| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,993,367 – 6,993,484 |
| Length | 117 |
| Max. P | 0.981111 |
| Location | 6,993,367 – 6,993,484 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -35.60 |
| Consensus MFE | -33.20 |
| Energy contribution | -33.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993367 117 + 22224390 UGG---UGGUGGUCGUGUUGGUCAGCGCCUGUCAACAUUAUUUCUCAAUUAAUUUUUCAUUUUUCACGAAAUUAACCCAGAAAUUGGCUGGGCAGUGACCUUCGCCACUUGGCACUUGGG .((---((((((.((....(((((..((((((((.....((((((...((((((((...........))))))))...)))))))))).))))..)))))..))))))....)))).... ( -31.20) >DroSec_CAF1 15769 120 + 1 UGCUGCUGGUGGUGGUGUUGGUCAGCGCCUGUCAACAUUAUUUCUCAAUUAAUUUUUCAUUUUUCACGAAAUUAACCCAGAAAUUGGCUGGGCAGUGACCUUCGCCACUUGGCACUUGGG ...((((...(((((((..(((((..((((((((.....((((((...((((((((...........))))))))...)))))))))).))))..)))))..))))))).))))...... ( -37.90) >DroSim_CAF1 873 120 + 1 UGCUGCUGGUGGUGGUGUUGGUCAGCGCCUGUCAACAUUAUUUCUCAAUUAAUUUUUCAUUUUUCACGAAAUUAACCCAGAAAUUGGCUGGGCAGUGACCUUUACCACUUGGCACUUGGG ...((((...(((((((..(((((..((((((((.....((((((...((((((((...........))))))))...)))))))))).))))..)))))..))))))).))))...... ( -37.70) >consensus UGCUGCUGGUGGUGGUGUUGGUCAGCGCCUGUCAACAUUAUUUCUCAAUUAAUUUUUCAUUUUUCACGAAAUUAACCCAGAAAUUGGCUGGGCAGUGACCUUCGCCACUUGGCACUUGGG ((((...((((((((....(((((..((((((((.....((((((...((((((((...........))))))))...)))))))))).))))..))))).)))))))).))))...... (-33.20 = -33.87 + 0.67)
| Location | 6,993,367 – 6,993,484 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -36.83 |
| Consensus MFE | -34.11 |
| Energy contribution | -33.67 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.47 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.981111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993367 117 - 22224390 CCCAAGUGCCAAGUGGCGAAGGUCACUGCCCAGCCAAUUUCUGGGUUAAUUUCGUGAAAAAUGAAAAAUUAAUUGAGAAAUAAUGUUGACAGGCGCUGACCAACACGACCACCA---CCA .....(((....((((((..(((((.((((((((..((((((.((((((((((((.....))))..)))))))).))))))...))))...)))).)))))....)).))))))---).. ( -35.70) >DroSec_CAF1 15769 120 - 1 CCCAAGUGCCAAGUGGCGAAGGUCACUGCCCAGCCAAUUUCUGGGUUAAUUUCGUGAAAAAUGAAAAAUUAAUUGAGAAAUAAUGUUGACAGGCGCUGACCAACACCACCACCAGCAGCA ......(((...((((.(..(((((.((((((((..((((((.((((((((((((.....))))..)))))))).))))))...))))...)))).)))))..).)))).....)))... ( -37.60) >DroSim_CAF1 873 120 - 1 CCCAAGUGCCAAGUGGUAAAGGUCACUGCCCAGCCAAUUUCUGGGUUAAUUUCGUGAAAAAUGAAAAAUUAAUUGAGAAAUAAUGUUGACAGGCGCUGACCAACACCACCACCAGCAGCA ......(((...(((((...(((((.((((((((..((((((.((((((((((((.....))))..)))))))).))))))...))))...)))).)))))...))))).....)))... ( -37.20) >consensus CCCAAGUGCCAAGUGGCGAAGGUCACUGCCCAGCCAAUUUCUGGGUUAAUUUCGUGAAAAAUGAAAAAUUAAUUGAGAAAUAAUGUUGACAGGCGCUGACCAACACCACCACCAGCAGCA ......((((....))))..(((((.((((((((..((((((.((((((((((((.....))))..)))))))).))))))...))))...)))).)))))................... (-34.11 = -33.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:55 2006