Locus 2600

Sequence ID X_DroMel_CAF1
Location 6,950,548 – 6,950,649
Length 101
Max. P 0.740726
window4248

overview

Window 8

Location 6,950,548 – 6,950,649
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.45
Mean single sequence MFE -29.93
Consensus MFE -16.47
Energy contribution -16.55
Covariance contribution 0.08
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.55
SVM decision value 0.45
SVM RNA-class probability 0.740726
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6950548 101 - 22224390
AUCCUUGCUGAAU---GU----------AUGUACCUCGUUUAAAUGGACGUCGUAGCAUUUGUC--GCCCAUUUCCGCA----UCCGCCUCGUCCUCGCUGCCCGAGGACAACUCCUCCA
.....((((((((---(.----------........))))))(((((.((.((.......)).)--).)))))...)))----........(((((((.....))))))).......... ( -22.70)
>DroSec_CAF1 158 111 - 1
AUCCUUGCUGAAU---GUAUGUAUGUGUAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUAUC--GCCCGUUUCCGCA----UCCGCCUCGUCCUCGCUGCUCGAGGACAACUCCUCCA
.....(((.((((---(..((...((((...(((..(((((....)))))..)))))))....)--)..)))))..)))----........(((((((.....))))))).......... ( -28.80)
>DroSim_CAF1 158 109 - 1
AUCCUUGCUGACU---GUAUU--UGUGUAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUAUC--GCCCGUUUCCGCA----UCCGCCUCGUCCUCGCUACCCGAGGACAACUCCUCCA
.....(((.(((.---((((.--.((((...(((..(((((....)))))..)))))))..)).--))..)))...)))----........(((((((.....))))))).......... ( -26.60)
>DroEre_CAF1 158 92 - 1
--------------------U--GGCGGAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUGUC--AGCCAAUUCCGCA----UCCGCCUCGUCCUCGCUGCCGGAGGACAACUCCUCCA
--------------------.--(((((((((((..(((((....)))))..)).((.......--.)).......)))----))))))..((((((.......)))))).......... ( -34.30)
>DroYak_CAF1 170 111 - 1
ACCCUUUUUUAGUAGUCUA-U--GGUGGAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUGUC--ACCGAUUUCCGCG----UCCGCUUCGUCCUCGCUGCCGGAGGACAACUCCUCCA
...........(((((...-.--(((((((((....(((((....)))))(((..((....)).--..))).....)))----))))))........))))).((((((....)))))). ( -31.80)
>DroAna_CAF1 161 97 - 1
-----------------------AGAUGACGCACCUCUUCCAGCUGGACGGCAUAGCACUUGUCCGGCUCAUCGCCGUUUCUGUCCUGGUCGUCCUCGCUAUCGGAGGACAUCUCCUCCA
-----------------------..................(((.(((((((.(((.((..(..((((.....))))..)..)).))))))))))..)))...((((((....)))))). ( -35.40)
>consensus
AUCCUUGCUGA_U___GU__U__GGUGGAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUGUC__GCCCAUUUCCGCA____UCCGCCUCGUCCUCGCUGCCCGAGGACAACUCCUCCA
.............................(((((..(((((....)))))..)).))).................................((((((.......)))))).......... (-16.47 = -16.55 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:43 2006