Locus 2598

Sequence ID	X_DroMel_CAF1
Location	6,947,521 – 6,947,634
Length	113
Max. P	0.970694

overview

Window 5

Location	6,947,521 – 6,947,634
Length	113
Sequences	3
Columns	113
Reading direction	forward
Mean pairwise identity	95.27
Mean single sequence MFE	-45.87
Consensus MFE	-40.34
Energy contribution	-40.57
Covariance contribution	0.23
Combinations/Pair	1.06
Mean z-score	-3.01
Structure conservation index	0.88
SVM decision value	1.30
SVM RNA-class probability	0.939017
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6947521 113 + 22224390
CGCGGACUGGCUAGUGGUGGGCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCAAGCCAAGUCAUCGAUGGCGCACCAGCGAAGUGCCAUCUCUAGAAAGUAA
.....(((..((((.(((((((.((((..(((((...)))))...))))(((((....)))))..)))....))))((((((((.........)))))))).))))..))).. ( -45.80)
>DroSec_CAF1 6716 112 + 1
CGCGGACUUGCUAGUGAUG-GCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCGAACCAAGUCAUCGAUGGCGCACUAGCGAAGUGUCAUCUCUAGAAAGUAA
.....((((.((((.((((-((.((((..(((((...)))))...))))(((((....))))).......))))))((((((((.........)))))))).)))).)))).. ( -44.10)
>DroSim_CAF1 7941 112 + 1
CGCGGACUUGCUAGUGAUG-GCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCGAACCAAGUCAUCGAUGGGGCACUAGCGAAGUGCCAUCUCUAGAAAGUAA
.....((((.((((.((((-(((...((.(..(((..(((((((..((((((((....))))))).....)..)))))))..)))...)))...))))))).)))).)))).. ( -47.70)
>consensus
CGCGGACUUGCUAGUGAUG_GCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCGAACCAAGUCAUCGAUGGCGCACUAGCGAAGUGCCAUCUCUAGAAAGUAA
.....((((.((((.((((.(((...((.(..(((..(((((((..((((((((....)))))).....))..)))))))..)))...)))...))))))).)))).)))).. (-40.34 = -40.57 +   0.23)

alignment

secondary structure

dotplot

Window 6

Location	6,947,521 – 6,947,634
Length	113
Sequences	3
Columns	113
Reading direction	reverse
Mean pairwise identity	95.27
Mean single sequence MFE	-40.67
Consensus MFE	-38.13
Energy contribution	-38.13
Covariance contribution	0.01
Combinations/Pair	1.08
Mean z-score	-2.74
Structure conservation index	0.94
SVM decision value	1.66
SVM RNA-class probability	0.970694
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6947521 113 - 22224390
UUACUUUCUAGAGAUGGCACUUCGCUGGUGCGCCAUCGAUGACUUGGCUUGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGCCCACCACUAGCCAGUCCGCG
..(((..((((.(((((((((.....)))))..(((((((.....((((((((((....)))))))))))))))))...))))((......))......))))..)))..... ( -39.70)
>DroSec_CAF1 6716 112 - 1
UUACUUUCUAGAGAUGACACUUCGCUAGUGCGCCAUCGAUGACUUGGUUCGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGC-CAUCACUAGCAAGUCCGCG
..((((.((((.((((.((...(((....))).(((((((.....((((((((((....)))))))))))))))))..............)).-)))).)))).))))..... ( -37.90)
>DroSim_CAF1 7941 112 - 1
UUACUUUCUAGAGAUGGCACUUCGCUAGUGCCCCAUCGAUGACUUGGUUCGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGC-CAUCACUAGCAAGUCCGCG
..((((.((((.(((((((...((...(((...(((((((.....((((((((((....)))))))))))))))))...)))...))...)))-)))).)))).))))..... ( -44.40)
>consensus
UUACUUUCUAGAGAUGGCACUUCGCUAGUGCGCCAUCGAUGACUUGGUUCGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGC_CAUCACUAGCAAGUCCGCG
..((((.((((.(((((((((.....)))))..(((((((.....((((((((((....)))))))))))))))))...))))((......))......)))).))))..... (-38.13 = -38.13 +   0.01)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006