| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,938,225 – 6,938,338 |
| Length | 113 |
| Max. P | 0.627129 |
| Location | 6,938,225 – 6,938,338 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.13 |
| Mean single sequence MFE | -46.82 |
| Consensus MFE | -42.75 |
| Energy contribution | -42.62 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6938225 113 + 22224390 UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUUUCGCGGAUCCCCGA-------UUCCCGGAUCGCGGAUC ..((((.(((((((((((((((.(((.........)))..)))(((((((...))))))).)))))))))))).)).))........(((((.(((-------((....))))).))))) ( -46.70) >DroSec_CAF1 23277 113 + 1 UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGA-------UUCCCGGGUCGCGGAUC ..((((.(((((((((((((((.(((.........)))..)))(((((((...))))))).)))))))))))).)).))(((.(((((...((((.-------....)))))))))))). ( -48.50) >DroEre_CAF1 31853 100 + 1 UCGCGUGGGCUACCUAAGAUC-------------CCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGA-------UACCCGGAUCGCGGAUC ..((((.((((((((((((..-------------.((((.((.......)).)))).....)))))))))))).)).))(((.((((.((((....-------.....))))))))))). ( -44.50) >DroYak_CAF1 24450 120 + 1 UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGAUUCCCGAUUCCCGGAUCGCGGAUC ..((((.(((((((((((((((.(((.........)))..)))(((((((...))))))).)))))))))))).)).))........(((((.((((..(((.....))))))).))))) ( -47.60) >consensus UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGA_______UUCCCGGAUCGCGGAUC ..((((.((((((((((((...............((....))((((((((...)))))))))))))))))))).)).))(((.((((.((((..((........))..))))))))))). (-42.75 = -42.62 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:32 2006