Locus 2592

Sequence ID	X_DroMel_CAF1
Location	6,933,854 – 6,933,952
Length	98
Max. P	0.998452

overview

Window 3

Location	6,933,854 – 6,933,952
Length	98
Sequences	5
Columns	101
Reading direction	forward
Mean pairwise identity	95.36
Mean single sequence MFE	-36.36
Consensus MFE	-34.18
Energy contribution	-34.58
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.97
Structure conservation index	0.94
SVM decision value	3.11
SVM RNA-class probability	0.998452
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6933854 98 + 22224390
GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU---
...((((((.(((((((((((((((((((....)).)))).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.20)
>DroSec_CAF1 18951 98 + 1
GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCCUUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU---
...((((((.(((((((((((((((((((....).))))).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.20)
>DroSim_CAF1 17801 98 + 1
GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCUCCAUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU---
...((((((.((((((((((((((((((....))))...).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.90)
>DroEre_CAF1 27249 98 + 1
GAUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUUAAAACUACAUAAUAUCUAAAGAGUCAGUGAGUGUCUUUCGCU---
...((((((.(((((((((((((((((((....)).)))).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.20)
>DroYak_CAF1 19702 101 + 1
GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUUAAAACUACAUACUAUCUAAAGAGUCAGUGAGUGUCUUUCGCUUGU
...((((((.(((((((((((((((((((....)).)))).)))))))))............((.((((..((....))..)))).))))))))))))... ( -36.30)
>consensus
GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU___
...((((((.(((((((((((((((((((....)).)))).))))))))).........(((.(((....((....))....))))))))))))))))... (-34.18 = -34.58 +   0.40)

alignment

secondary structure

dotplot

Window 4

Location	6,933,854 – 6,933,952
Length	98
Sequences	5
Columns	101
Reading direction	reverse
Mean pairwise identity	95.36
Mean single sequence MFE	-32.42
Consensus MFE	-29.08
Energy contribution	-29.28
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-2.05
Structure conservation index	0.90
SVM decision value	2.69
SVM RNA-class probability	0.996376
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6933854 98 - 22224390
---AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC
---.((((.((((....((((.((....)).)))).(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... ( -31.40)
>DroSec_CAF1 18951 98 - 1
---AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAAGGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC
---.((((.((((....((((.((....)).)))).(((((.......)))))..(((((((...(((....)))..)))))))...))))..)))).... ( -33.20)
>DroSim_CAF1 17801 98 - 1
---AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAUGGAGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC
---.((((.((((....((((.((....)).)))).(((((.......)))))..(((((((...((((....)))))))))))...))))..)))).... ( -35.50)
>DroEre_CAF1 27249 98 - 1
---AGCGAAAGACACUCACUGACUCUUUAGAUAUUAUGUAGUUUUAAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAUC
---.((((.((((.....((((....))))......(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... ( -30.60)
>DroYak_CAF1 19702 101 - 1
ACAAGCGAAAGACACUCACUGACUCUUUAGAUAGUAUGUAGUUUUAAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC
....((((.(((((((..((((....))))..))).(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... ( -31.40)
>consensus
___AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC
....((((.((((.......................(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... (-29.08 = -29.28 +   0.20)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:30 2006