Locus 2591

Sequence ID X_DroMel_CAF1
Location 6,933,270 – 6,933,377
Length 107
Max. P 0.992890
window4232

overview

Window 2

Location 6,933,270 – 6,933,377
Length 107
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 88.39
Mean single sequence MFE -33.30
Consensus MFE -26.48
Energy contribution -26.40
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -2.76
Structure conservation index 0.80
SVM decision value 2.36
SVM RNA-class probability 0.992890
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6933270 107 - 22224390
CACCUUAAGGCAAAGGA-GGUUUUGCAGAAUUUCACGGUUGAAUAUAACUGGGGGAUCGUUUUGAG-GGUCAGUCUAAGUUAUAUUCGUCGAGAAACUGCAAAAUCGUC
..((((......)))).-((((((((((..((((.((((.(((((((((((((.((((........-))))..))).)))))))))))))).))))))))))))))... ( -34.70)
>DroSec_CAF1 18365 108 - 1
CACCUUAAGGCGAAGGG-GGUUUUGUAGAAUUUUACGGUUGAAUAUAACUGGGGGAUCGUUUGAAGGGGUCAGUCUAAGUUAUAUUCUCCAAGAAACUGCAAAAUCGUC
..((((......)))).-((((((((((..((((..((..(((((((((((((.((((.(.....).))))..))).)))))))))).))..))))))))))))))... ( -31.60)
>DroSim_CAF1 16939 107 - 1
CACCUUAAGGCAAAGGG-GGUUUUGCAGAAUUUUACGGUUGAAUAUAACUGGGGGAUCGUUUGAAG-GGUCAGUCUAAGUUAUAUUCUCCAAGAAACUGCAAAAUCGUC
..((((......)))).-((((((((((..((((..((..(((((((((((((.((((........-))))..))).)))))))))).))..))))))))))))))... ( -33.50)
>DroEre_CAF1 26660 106 - 1
CAUCUUAAGGCAAACGG-GGUUUUGCAGUAUU-UACGGUUGAAUAUAACUGAGGGAUCGUUUGAAG-GGUCAGGCUACGUUAUAUUCUCCAAGAAUCUGCAGAAUCUCC
...............((-((((((((((.(((-(..((..(((((((((.((....))((((((..-..))))))...))))))))).))..)))))))))))))))). ( -33.70)
>DroYak_CAF1 19118 107 - 1
CAUCUUAUGGCAAAUGGGGGUUUUGCAGUAUU-UGCGGUUGAAUAUAACUGAGGGAUCGUUUAAAG-GGUCAGGCUGUGUUAUAUUCUCCAAGAAACUGCAAAAUCUUU
...(((((.....)))))(((((((((((.((-(..((..(((((((((..((.((((........-))))...))..))))))))).)).))).)))))))))))... ( -33.00)
>consensus
CACCUUAAGGCAAAGGG_GGUUUUGCAGAAUUUUACGGUUGAAUAUAACUGGGGGAUCGUUUGAAG_GGUCAGUCUAAGUUAUAUUCUCCAAGAAACUGCAAAAUCGUC
..((((......))))..((((((((((..((((..((..((((((((((.((.((((.........))))...)).)))))))))).))))))..))))))))))... (-26.48 = -26.40 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:29 2006