Locus 2590

Sequence ID X_DroMel_CAF1
Location 6,933,149 – 6,933,244
Length 95
Max. P 0.587632
window4231

overview

Window 1

Location 6,933,149 – 6,933,244
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 81.05
Mean single sequence MFE -17.53
Consensus MFE -9.43
Energy contribution -11.16
Covariance contribution 1.73
Combinations/Pair 1.10
Mean z-score -1.98
Structure conservation index 0.54
SVM decision value 0.11
SVM RNA-class probability 0.587632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6933149 95 - 22224390
AAAUCCACUAAUGGUUUUCUCAUUUAAAUUAAGCCUAAGUCUUAAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA
......(((...(((((.............)))))..))).....(..(((((((.((.(((((((....)))).)))))..)))))))..)... ( -17.42)
>DroSec_CAF1 18245 95 - 1
AGACCCACCAAUGGUUUUCUCAUUCAAAUUAAACCUAAGUCCUUAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA
............(((((.............)))))..........(..(((((((.((.(((((((....)))).)))))..)))))))..)... ( -16.72)
>DroSim_CAF1 16818 95 - 1
AGAACCACUAAUGGUUUUCUCAUUCAAAUUAAACCUAGGUCUUUAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA
(((((((....)))))))...........................(..(((((((.((.(((((((....)))).)))))..)))))))..)... ( -18.70)
>DroEre_CAF1 26553 80 - 1
UGAAUAUUUAAUGGUUUUCUCAUUAAAAUUAAACCUAAGUCUUAUGACUUACUGCA---------------UGUACUCUGCAGCAAGUUUUUAAA
......((((((((.....))))))))...((((.((((((....))))))(((((---------------.......)))))...))))..... ( -14.60)
>DroYak_CAF1 18995 95 - 1
CAAACCAAUAAUGGUUUUCUCCUUAAAAUUAAACCUAAGUCUUAUGAUAAUUUGCAAACGAGACAGUUUACUGUACUCUGCAGCAAGUUCUCAGA
.((((((....))))))...........................(((.(((((((....(((((((....)))).)))....))))))).))).. ( -20.20)
>consensus
AGAACCACUAAUGGUUUUCUCAUUAAAAUUAAACCUAAGUCUUAAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA
............(((((.............)))))..........(..(((((((....(((((((....)))).)))....)))))))..)... ( -9.43 = -11.16 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:28 2006