| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 862,734 – 862,846 |
| Length | 112 |
| Max. P | 0.653558 |
| Location | 862,734 – 862,846 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.44 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -15.57 |
| Energy contribution | -16.57 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 862734 112 - 22224390 UCCCGCACUUAUAAUUAAACCAUCGAU--------AAACACUCCAACGCAAUGGGACUGUGACGAUGGCCAAUGAAAGUAAAUCAAAUUCUUCCUGCAGCUGGCAGUUUAACCCAGCCGU ....(((............((((((..--------..(((.(((.........))).)))..))))))....(((.......))).........))).(((((.........)))))... ( -21.60) >DroEre_CAF1 69080 112 - 1 CCCCGCACUUAUAAUUAAGCCAUCGAUAAGCAGAUAAACACUCCAUCGCAAUGGGACUGUGUCGAUGGCGAAUGAAAGUAAAUCAAAUUUUG----CAGCUGGCAGUUUAACCCU----A .((.((............(((((((((..((((........(((((....))))).)))))))))))))........(((((......))))----).)).))............----. ( -27.00) >DroYak_CAF1 65116 96 - 1 CCCCGCACUUAUAAUUAAGCCAUCGAU--------AAACACUCCAUCGCAGUUGCACUGUGUCGAUGGCAAAUGAAAGUAAAUCAAAUUUUCCCCACAGCUGGC---------------- .((.((............((((((((.--------...........(((((.....)))))))))))))....((((((.......))))))......)).)).---------------- ( -23.70) >consensus CCCCGCACUUAUAAUUAAGCCAUCGAU________AAACACUCCAUCGCAAUGGGACUGUGUCGAUGGCAAAUGAAAGUAAAUCAAAUUUUCCC__CAGCUGGCAGUUUAACCC______ .((.((............(((((((((..........(((.(((.........))).))))))))))))...(((.......))).............)).))................. (-15.57 = -16.57 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:09 2006