Locus 2587

Sequence ID	X_DroMel_CAF1
Location	6,931,011 – 6,931,122
Length	111
Max. P	0.988580

overview

Window 6

Location	6,931,011 – 6,931,122
Length	111
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	77.83
Mean single sequence MFE	-45.08
Consensus MFE	-27.18
Energy contribution	-27.88
Covariance contribution	0.70
Combinations/Pair	1.27
Mean z-score	-2.95
Structure conservation index	0.60
SVM decision value	2.13
SVM RNA-class probability	0.988580
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6931011 111 + 22224390
CCCAGCGACAAUCCGCAGAGAUUAUUCAGCGAGUUGUUGCUGGCCAUCGGCGGCAGGUGGCACAUGUUGCCGCC---------CCCUAAAUUGUUGGCACUCCCACCAUUUCCGCCGCUG
.((((((((((..(((.(((....))).)))..))))))))))....(((((((.(((((((.....)))))))---------........((.(((.....))).)).....))))))) ( -48.90)
>DroVir_CAF1 22261 102 + 1
CCAAUCGAUAGGCCGCACAGAUUGUUCAGCGAAUUGUUGCUGGCCAUUGGCGGCAUAUUGCAGAUGUUGCCGC------------CAAGGGAAUUGGCGCUGCCGCCAUUACCG------
..........((((((((((.(((.....))).))).))).)))).(((((((((((((...)))).))))))------------)))((....(((((....)))))...)).------ ( -40.90)
>DroPse_CAF1 15874 108 + 1
CCCAGCGACAGUCCGCAUAGAUUGCUAAGCGAAUUGUUGCUGGUCAUUGGCAGCAGGUUGCACAUGUUGCCGC------------CAAGAUUAUUGGCACUGCCGCCAUUGGCGCCGAUG
.(((((((((((.(((.(((....))).))).))))))))))).(((((((.((((((.((....)).)))((------------(((.....)))))..))).(((...)))))))))) ( -50.80)
>DroWil_CAF1 19874 106 + 1
CCCAAUGAUAGACCGCACAGGUUGUUCAAUGAAUUGUUACUGGCCAUCGGUGGCAUAUUGCACAUAUUGCCACC---------GCCAAGGGAAUUGGCACUGCCGCCAUUACCGC-----
..((.(((..((((.....))))..))).)).........((((....(((((((............)))))))---------(((((.....)))))......)))).......----- ( -32.80)
>DroAna_CAF1 14867 120 + 1
CCCAGCGACAGGCCGCACAGAUUGUUAAGCGAAUUGUUGCUGGUCAUGGGCGGCAGGUUGCACAUGUUGCCGCCACCGCCGCCGCCAAGGGAAUUGGCACUGCCACCAUUACCACCGAUG
.((((((((((..(((............)))..))))))))))..(((((((((.(((.(((.....))).)))...))))))(((((.....)))))........)))........... ( -46.30)
>DroPer_CAF1 15885 108 + 1
CCCAGCGACAGUCCGCAUAGAUUGCUAAGCGAAUUGUUGCUGGUCAUUGGCAGCAGGUUGCACAUGUUGCCGC------------CAAGAUUAUUGGCACUGCCGCCAUUGGCGCCGAUG
.(((((((((((.(((.(((....))).))).))))))))))).(((((((.((((((.((....)).)))((------------(((.....)))))..))).(((...)))))))))) ( -50.80)
>consensus
CCCAGCGACAGUCCGCACAGAUUGUUAAGCGAAUUGUUGCUGGCCAUUGGCGGCAGGUUGCACAUGUUGCCGC____________CAAGAGAAUUGGCACUGCCGCCAUUACCGCCGAUG
.((((((((((..(((............)))..)))))))))).....((((((((...........(((((......................)))))))))))))............. (-27.18 = -27.88 +   0.70)

alignment

secondary structure

dotplot

Window 7

Location	6,931,011 – 6,931,122
Length	111
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	77.83
Mean single sequence MFE	-44.07
Consensus MFE	-26.26
Energy contribution	-26.68
Covariance contribution	0.42
Combinations/Pair	1.34
Mean z-score	-2.52
Structure conservation index	0.60
SVM decision value	1.71
SVM RNA-class probability	0.973337
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6931011 111 - 22224390
CAGCGGCGGAAAUGGUGGGAGUGCCAACAAUUUAGGG---------GGCGGCAACAUGUGCCACCUGCCGCCGAUGGCCAGCAACAACUCGCUGAAUAAUCUCUGCGGAUUGUCGCUGGG
((.((((((....(((((.(..(((..(......)..---------)))(....)...).)))))..)))))).)).(((((.((((..(((.((......)).)))..)))).))))). ( -51.40)
>DroVir_CAF1 22261 102 - 1
------CGGUAAUGGCGGCAGCGCCAAUUCCCUUG------------GCGGCAACAUCUGCAAUAUGCCGCCAAUGGCCAGCAACAAUUCGCUGAACAAUCUGUGCGGCCUAUCGAUUGG
------(((((.((((((((.((((((.....)))------------)))(((.....)))....))))))))..((((.(((...(((........)))...))))))))))))..... ( -40.00)
>DroPse_CAF1 15874 108 - 1
CAUCGGCGCCAAUGGCGGCAGUGCCAAUAAUCUUG------------GCGGCAACAUGUGCAACCUGCUGCCAAUGACCAGCAACAAUUCGCUUAGCAAUCUAUGCGGACUGUCGCUGGG
.........((.(((((((((((((((.....)))------------)))(((.....)))...))))))))).)).(((((.(((.(((((.(((....))).))))).))).))))). ( -46.20)
>DroWil_CAF1 19874 106 - 1
-----GCGGUAAUGGCGGCAGUGCCAAUUCCCUUGGC---------GGUGGCAAUAUGUGCAAUAUGCCACCGAUGGCCAGUAACAAUUCAUUGAACAACCUGUGCGGUCUAUCAUUGGG
-----...((..((((.((...(((((.....)))))---------(((((((.(((.....))))))))))).).))))...))...(((.(((...(((.....)))...))).))). ( -32.50)
>DroAna_CAF1 14867 120 - 1
CAUCGGUGGUAAUGGUGGCAGUGCCAAUUCCCUUGGCGGCGGCGGUGGCGGCAACAUGUGCAACCUGCCGCCCAUGACCAGCAACAAUUCGCUUAACAAUCUGUGCGGCCUGUCGCUGGG
(((.(((((((..(((.(((.((((((.....))))))((.((....)).))......))).)))))))))).))).(((((.(((..((((............))))..))).))))). ( -48.10)
>DroPer_CAF1 15885 108 - 1
CAUCGGCGCCAAUGGCGGCAGUGCCAAUAAUCUUG------------GCGGCAACAUGUGCAACCUGCUGCCAAUGACCAGCAACAAUUCGCUUAGCAAUCUAUGCGGACUGUCGCUGGG
.........((.(((((((((((((((.....)))------------)))(((.....)))...))))))))).)).(((((.(((.(((((.(((....))).))))).))).))))). ( -46.20)
>consensus
CAUCGGCGGUAAUGGCGGCAGUGCCAAUAACCUUG____________GCGGCAACAUGUGCAACCUGCCGCCAAUGACCAGCAACAAUUCGCUGAACAAUCUGUGCGGACUGUCGCUGGG
............((((((((((((.......................)))(((.....)))...)))))))))....(((((.(((..((((.((......)).))))..))).))))). (-26.26 = -26.68 +   0.42)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:24 2006