| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,929,088 – 6,929,190 |
| Length | 102 |
| Max. P | 0.615402 |
| Location | 6,929,088 – 6,929,190 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -13.67 |
| Consensus MFE | -12.43 |
| Energy contribution | -11.77 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6929088 102 - 22224390 CAA---CAGAACUCACAACUACACACACACACAUA--CACAAAACCAGGCGAAACGGUAAACUAGCACUUCAA----AGUUCGCGUAAAAGUGUUAGUCAAAAACCAUUUU ...---.............................--..................(((..((((((((((...----.(....)....)))))))))).....)))..... ( -13.10) >DroSim_CAF1 12773 98 - 1 CAA---CAGAACACACAACUACACACACACA------CACAAAACCAGGCGAAUCGGUAAACUAGCACUUCAA----GGUUCGCGUAAGAGUGUUAGUCGAAAACCAUUUU ...---.........................------..........((....(((....((((((((((..(----.(....).)..)))))))))))))...))..... ( -14.20) >DroEre_CAF1 22521 111 - 1 UAACAACAGAACACACAAAUACACACACACACAAACACAAAGAACCAAGCAUACCGGUAAACUAGCACUUGAAGAAAAGUUCGCGUAGGAGUGUUGGUCAAAAGCCAUUUU .........(((((.(...(((.....................(((.........)))......((((((......))))..))))).).)))))(((.....)))..... ( -13.70) >consensus CAA___CAGAACACACAACUACACACACACACA_A__CACAAAACCAGGCGAAACGGUAAACUAGCACUUCAA____AGUUCGCGUAAGAGUGUUAGUCAAAAACCAUUUU .......................................................(((..((((((((((..................)))))))))).....)))..... (-12.43 = -11.77 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006