Locus 2581

Sequence ID X_DroMel_CAF1
Location 6,913,637 – 6,913,750
Length 113
Max. P 0.991733
window4218

overview

Window 8

Location 6,913,637 – 6,913,750
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.50
Mean single sequence MFE -34.85
Consensus MFE -32.38
Energy contribution -31.87
Covariance contribution -0.50
Combinations/Pair 1.10
Mean z-score -2.43
Structure conservation index 0.93
SVM decision value 2.28
SVM RNA-class probability 0.991733
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6913637 113 + 22224390
-------CUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCACCGAUUCCGAUGAUUACGAGUACGAUGUGCUUCGUAAACAGAAGAAAAACAAAAAAAAAA
-------.....((((((..(((.....)))..))))))(((((....)))))...........(((...((.((((((((((...)))).)))))).))...))).............. ( -32.60)
>DroSec_CAF1 37982 112 + 1
-------CUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCACCGAUUCCGAUGACUACGAGUACGAUGUGCUUCGUAAACAGAAGAAA-ACAAAAAAAAAA
-------....(((((((..(((.....)))..))))))).(((....)))(((((((((.((....)).))....)))))))..(((.((((.......))))...-)))......... ( -31.30)
>DroSim_CAF1 22140 111 + 1
-------GUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCACACCGAUUCCGAUGAUUACGAGUACGAUGUGCUUCGUAAACAGAAGAAA-ACAAAAA-AAAA
-------(((((((((((..(((.....)))..))))).(((((....))))).(((.((.((....)).)).((((((((((...)))).))))))...)))))))-)).....-.... ( -34.50)
>DroYak_CAF1 42065 115 + 1
UGUGUGUCGUUUUGGCCAUUGGCUUUUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCAGCGAUUGCGAUGAUUACGAGUGCGAUGUGCUUCGUAAACGGAGCAAA-ACAAGAA----A
..((((((((..((((((..(((.....)))..))))))(((((....)))))..((((((...))))))...........))))).(((((((....)))))))..-)))....----. ( -41.00)
>consensus
_______CUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCACCGAUUCCGAUGAUUACGAGUACGAUGUGCUUCGUAAACAGAAGAAA_ACAAAAA_AAAA
............((((((..(((.....)))..))))))(((((....)))))...........(((...((.((((((((((...)))).)))))).))...))).............. (-32.38 = -31.87 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:16 2006