Locus 2578

Sequence ID X_DroMel_CAF1
Location 6,912,024 – 6,912,144
Length 120
Max. P 0.865087
window4210

overview

Window 0

Location 6,912,024 – 6,912,144
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -28.38
Consensus MFE -18.23
Energy contribution -20.22
Covariance contribution 2.00
Combinations/Pair 1.23
Mean z-score -2.05
Structure conservation index 0.64
SVM decision value 0.84
SVM RNA-class probability 0.865087
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6912024 120 + 22224390
UCAAUAAUUUUUCAAAACUUUUUUUGGCGGUGUGGCAGCACUGAUUCACUCACUGUUACCAGCUCUGUUAAGUGUCUGUUGACAACACCAACAUUGCCAAUCGAAUAUGGUAUUCGAUAU
........................(((((((((((.((((.(((.....))).)))).))............((((....))))......)))))))))((((((((...)))))))).. ( -28.90)
>DroSec_CAF1 36402 120 + 1
UCAAUUACUUUUUUAAACUAUUUUUGACUGUGUGGCAACACGGUUUCACUCACUGUUACCAGCUCUGUUAAGUGUAUGUUGACAGCACCAACAGUGCCAAUCGAAAAUGGUAAUCGAUAU
................(((((((((((.((.(((....)))(((..((.....))..))).((.(((((..((((.((....)))))).))))).)))).)))))))))))......... ( -31.10)
>DroSim_CAF1 20529 120 + 1
UCAAUUACUUUUUAAAACUAUUUUUGACUGUGUGGCAACACGGUUUCACUCACUGUUACCAGGUCUGUUAAGUGUAUGUUGACAGCACCAACAGUGCCAAUCGAAAAUGGUAAUCGAUAU
................(((((((((((((((((....)))))).......(((((((....((((((((((.......))))))).))))))))))....)))))))))))......... ( -33.30)
>DroYak_CAF1 40271 109 + 1
UCAA--AUUUUAUAAAACUAUUUUUAGCAGUGUGGCAGCACUGAUUUUUCAACUGAUAACAGCACUGUUAAUAGUCCGUUGGCAGCACCA---------AACGAUAGCAGUAAUCGAUAU
....--..........(((((...(((((((((..(((...(((....))).)))......))))))))))))))...((((.....)))---------).((((.......)))).... ( -20.20)
>consensus
UCAAUUACUUUUUAAAACUAUUUUUGACUGUGUGGCAACACGGAUUCACUCACUGUUACCAGCUCUGUUAAGUGUAUGUUGACAGCACCAACAGUGCCAAUCGAAAAUGGUAAUCGAUAU
................(((((((((((((((((....)))))).......(((((((.......(((((((.......)))))))....)))))))....)))))))))))......... (-18.23 = -20.22 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006