Locus 2577

Sequence ID X_DroMel_CAF1
Location 6,911,869 – 6,911,984
Length 115
Max. P 0.616214
window4209

overview

Window 9

Location 6,911,869 – 6,911,984
Length 115
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.57
Mean single sequence MFE -22.10
Consensus MFE -14.55
Energy contribution -15.23
Covariance contribution 0.67
Combinations/Pair 1.10
Mean z-score -1.91
Structure conservation index 0.66
SVM decision value 0.17
SVM RNA-class probability 0.616214
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6911869 115 + 22224390
GAUUUUAGAUUUGAAUACCUUAAUUGCAAAU--GUCAGCAAUGUUUUGCUGAUAAUUGUACUUAUAAGGCCUGCA--UAUAUGGU-UUCAAACUAGUUUGAACGUAACGCCUUUUCAUAA
...........((((..(((((..(((((.(--((((((((....))))))))).)))))....)))))...((.--..((((..-.(((((....))))).))))..))...))))... ( -26.40)
>DroSec_CAF1 36251 112 + 1
GAUUUUAGAUUUGAAUACCUUAAUUGCAAAUUAAUUGCAAAUUUUUUACUGAUAAUUGUACUUAUAAGGCCCACAUAUAUAUUAUGUUCAAACUAG--------AAACGCCUUUCCAUGA
..((((((.(((((...(((((.((((((.....))))))......(((........)))....)))))...(((((.....))))))))))))))--------)).............. ( -18.80)
>DroSim_CAF1 20383 108 + 1
GAUCUUAGAUUUGAAUACCUUAAUUUCAAAU--GUUAGCAAUUUUUUGCUGAUAAUUGUACUUAUAAGGCCU--AUAUAUAUUAUGUUCAAACUAG--------AAACGCCUUUUCAUGA
..(((.((.(((((((((((((....(((.(--((((((((....))))))))).)))......)))))...--..........))))))))))))--------)............... ( -21.11)
>consensus
GAUUUUAGAUUUGAAUACCUUAAUUGCAAAU__GUUAGCAAUUUUUUGCUGAUAAUUGUACUUAUAAGGCCU_CAUAUAUAUUAUGUUCAAACUAG________AAACGCCUUUUCAUGA
.....(((.(((((((((((((..(((((....((((((((....))))))))..)))))....)))))...............)))))))))))......................... (-14.55 = -15.23 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006