| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,900,890 – 6,900,985 |
| Length | 95 |
| Max. P | 0.883200 |
| Location | 6,900,890 – 6,900,985 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -18.30 |
| Energy contribution | -18.46 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6900890 95 + 22224390 ----------------UGCGGAAGGAGAUUCGGUCCAA--AAAAAGGGACUGGGUGUCAUGGAUUGGCCA-------UUUUGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------(((((.........((((((..--......))))))((((((((..((..(((.-------........)))......))..))))))))....)))))..... ( -28.00) >DroVir_CAF1 54576 112 + 1 GUCAGAGGCCGCAGCAGGGCGAAGGCGAAUGGUACCAG--AAAGGGGG----GGUGCUGUGGCGGGGCAAUCAUUCUAU-UUCAAGGCAA-AAUGUAAAUGACGCCAUAAUUGCAGUCAU (((....(((((((((..((....))........((..--....))..----..)))))))))((((......))))..-.....)))..-.......(((((((.......)).))))) ( -29.40) >DroSec_CAF1 25282 93 + 1 ----------------UGUGGAUGGAGAUUUGGUCCAA--AA-CGGGGGCUAGGUGUCAUGGAUUGGCCA-------UU-UGGAAGGCAGGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------((((..........((((((..--..-...))))))((((((((..((..(((.-------..-.....)))......))..)))))))).........)))). ( -27.10) >DroEre_CAF1 24518 93 + 1 ----------------UGUGGU-GGAGAUUUGGUCCAA--AAAGGGGGGCUGGGUGUCAUGGAUUGGCCA-------UU-UGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------(((((.-.(......(((((..--......))))).((((((((..((..(((.-------..-.....)))......))..))))))))....)..).)))). ( -28.30) >DroYak_CAF1 28556 96 + 1 ----------------UGUGGAAGGAGAUUUGGUCCAGAGAAAAGGGGGCUGGGUGUCAUGGAUUGGCCA-------UU-UGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------((((.((........(((((..........))))).((((((((..((..(((.-------..-.....)))......))..))))))))....)).))))... ( -25.80) >consensus ________________UGUGGAAGGAGAUUUGGUCCAA__AAAAGGGGGCUGGGUGUCAUGGAUUGGCCA_______UU_UGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU .................(((..........((((((..........))))))((((((((......(((................)))..........)))))))).........))).. (-18.30 = -18.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:06 2006