| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,900,165 – 6,900,281 |
| Length | 116 |
| Max. P | 0.690843 |
| Location | 6,900,165 – 6,900,281 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.10 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -21.76 |
| Energy contribution | -21.20 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6900165 116 - 22224390 UUUCAAA----GGCUCAAUGUCGAAACUUGAGAACUUUACAACUUGAGCCACAAGAUGUAUCAAAAUUGAGCUGCUUUCGAGCCAAGAUGGGCGGUCAAUUAAAAUCAAAAUCAAGCCAA .......----((((.....((((((((..(......((((.((((.....)))).))))......)..))....))))))(((......))).....................)))).. ( -23.80) >DroSec_CAF1 24527 116 - 1 UUUCAAA----GGCUCAAUGCCGAAACUUGAGAACUUUACAACUUGAGGCACAAGAUGUAAAGAAAUUGAGCUGCUUUCGAGCCAAGAUGGGCGGUCAAUUAAAAUCAAAAUGAAGCCAA (((((..----(((.....))).....((((...(((((((.((((.....)))).))))))).((((((.((((((((.......)).))))))))))))....))))..))))).... ( -30.70) >DroEre_CAF1 23423 116 - 1 UUCCAAA----GGCUCAAUGCCGAAACUUGAGGACUUUACAACUUGAGCCACAGGAUGUGGCGAAAUUGAGCUGAUUUCGAGUCAAGAUGGGCGGUCAAUUAAAAUCAAAAUGAAGCCAA .......----(((((...((((...((((.((.(((........))))).))))...))))((((((.....)))))))))))......(((..(((.((.......)).))).))).. ( -31.10) >DroYak_CAF1 27484 120 - 1 CUUCAAAAGGCGGCUCAAUGCCGAAACUUGAGAACUUUACAACUUGAGCCACAAGAUGUAUCGAAAUUGAGAUGAUUUCGAGCCAAAAUGGGCGGUCAAUUAAAAUCGAAAUGAAGCCAA .(((..(((.((((.....))))...)))..)))...((((.((((.....)))).))))((((((((.....))))))))(((......)))(((..(((........)))...))).. ( -29.60) >consensus UUUCAAA____GGCUCAAUGCCGAAACUUGAGAACUUUACAACUUGAGCCACAAGAUGUAUCGAAAUUGAGCUGAUUUCGAGCCAAGAUGGGCGGUCAAUUAAAAUCAAAAUGAAGCCAA ...........((((..((..(((((((..(......((((.((((.....)))).))))......)..))....))))).(((......))).................))..)))).. (-21.76 = -21.20 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:06 2006