Locus 2572

Sequence ID X_DroMel_CAF1
Location 6,895,740 – 6,895,833
Length 93
Max. P 0.757829
window4203

overview

Window 3

Location 6,895,740 – 6,895,833
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -21.70
Consensus MFE -14.43
Energy contribution -15.30
Covariance contribution 0.87
Combinations/Pair 1.10
Mean z-score -1.86
Structure conservation index 0.66
SVM decision value 0.49
SVM RNA-class probability 0.757829
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6895740 93 + 22224390
AAGACCAACAGGUUAAAUCUGAAAA---AGUGCAAUUUUAAUGGCA-ACGUGCUUCGAUUGCCACCGCAAACAUUUUGCCGC-------UUAGCACAUUUU----------------UCG
..((((....))))......(((((---(((((........(((((-(((.....)).))))))..((((.....))))...-------...)))).))))----------------)). ( -25.20)
>DroSec_CAF1 20065 94 + 1
AAGACCAACAGGUUAAAUCUGAAAA---AGUGAAAUUUUAAUGGCAAACGUGCUUCGAUUGCCACCGCAAACAUUUUGCCGC-------UUAGCAUAUUUU----------------CCG
..........((..((((.((...(---((((.........((((((.((.....)).))))))..((((.....)))))))-------))..)).)))).----------------)). ( -19.80)
>DroEre_CAF1 19433 93 + 1
AAAACCAACAGGUUAAAUCUCAAAAA----UGAAAUUUUAAUGGCAAACGUGCUUCGAUUGCCAACGCAAACAUUUUGCCGC-------CUAGCAUAUUUU----------------CCG
.........((((.............----...........((((((.((.....)).))))))..((((.....)))).))-------))..........----------------... ( -15.50)
>DroYak_CAF1 22856 120 + 1
AAAACCAACAGGUUAAAUCUGAAAAAAAAGUGCACUUUUAAUGGCAAACGUGCUUCGAUGGCCACCGCAAACAUUUUGCCACUUGCCACUUGGCAUAUUUUCCAAUUUUCUUAUUUUCCG
..........((..((((..((((((((((....)))))..(((.(((..((((..(.((((....((((.....)))).....)))))..))))..))).))).)))))..)))).)). ( -26.30)
>consensus
AAAACCAACAGGUUAAAUCUGAAAA___AGUGAAAUUUUAAUGGCAAACGUGCUUCGAUUGCCACCGCAAACAUUUUGCCGC_______UUAGCAUAUUUU________________CCG
..((((....))))...............((((........((((((.((.....)).))))))..((((.....)))).............))))........................ (-14.43 = -15.30 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006