Locus 2569

Sequence ID X_DroMel_CAF1
Location 6,892,314 – 6,892,431
Length 117
Max. P 0.812103
window4197

overview

Window 7

Location 6,892,314 – 6,892,431
Length 117
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 79.29
Mean single sequence MFE -19.91
Consensus MFE -14.36
Energy contribution -14.98
Covariance contribution 0.63
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.72
SVM decision value 0.65
SVM RNA-class probability 0.812103
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6892314 117 - 22224390
UUUAACCCCUUCAAGGGCAUAAAAAUGCAUCUGGGAAUAACUCCCUAACCCUUU-UCUAUUUUCCAAUGCGUAUUCCCCGUAUGCAAAUCAACCCUUUUUUUCUUUUUGCACUGCGCA
((((..(((.....)))..)))).((((((.((((((.................-.....))))))))))))......((((((((((.................)))))).)))).. ( -20.78)
>DroSec_CAF1 16658 117 - 1
UUUAACCCCUUCAAGGGCAUAAAAAUGCAUCUGGGAAUAUCUCCCUAACCCUUUUUUUAUUUUCCAGUGUGUAUUCCCCGUAUGCAAAUCAAGCGUU-UUCCCUUUUUCCACUGCACA
............(((((....(((((((..(((((((.......................)))))))(((((((.....)))))))......)))))-)))))))............. ( -20.60)
>DroEre_CAF1 16124 112 - 1
UUUAACCCCUUC-AGGGCAUAAAAAUGCAUCUGGGAAUAUUUC-CUAACCCUU--UCUAUUUUCAAAUGUGUAUUUCCCGCAUGCAAAUCAAGCGUU-UUCC-CUUUUGCGCUGCACA
((((..(((...-.)))..))))..(((((.((((((......-.........--...................)))))).))))).....(((((.-....-.....)))))..... ( -20.98)
>DroYak_CAF1 19180 94 - 1
UUUAAACCCUUCGAGGGCAUAAAAAUGCAUUUGGGAAUAUUUCGCUAGCCCUU--UCUAUUUUCCCAUG----UUCCCCGCAUGCAAAUCAGCCGUU-UUU-----------------
((((..(((.....)))..))))..(((((..((((((((.....(((.....--.))).......)))----)))))...)))))...........-...----------------- ( -17.30)
>consensus
UUUAACCCCUUCAAGGGCAUAAAAAUGCAUCUGGGAAUAUCUCCCUAACCCUU__UCUAUUUUCCAAUGUGUAUUCCCCGCAUGCAAAUCAACCGUU_UUCC_UUUUUGCACUGCACA
((((..(((.....)))..))))..((((((.((((((((..............................)))))))).).)))))................................ (-14.36 = -14.98 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:58 2006