| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,890,113 – 6,890,215 |
| Length | 102 |
| Max. P | 0.956556 |
| Location | 6,890,113 – 6,890,215 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -22.67 |
| Energy contribution | -22.05 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6890113 102 + 22224390 GCCGAAGAUUACCGCGGAUCUGCGCGGAUAUGAUGCUGCCCAGCCAUACAUACACGUACCUAAAAAUCUUUGGUCUUCGAUGUGCGUCUAAU-------GUUCGAAUGU ((((((((((.(((((......))))).(((((((((....)).))).))))............)))))))))).(((((...((((...))-------)))))))... ( -27.60) >DroSec_CAF1 14538 92 + 1 GCCGAAGAUUACCGCGGAUCUGCGCGGAUAUGAUGCUGCCCAGCCAU----------ACCUAAAAAUCUUUGGUCUUCGGUGUUCGUCUUAU-------GUACGAAUGU ((((((((((((((((......))))).((((..(((....))))))----------)............)))))))))))(((((((....-------).)))))).. ( -31.60) >DroSim_CAF1 15243 92 + 1 GCCGAAGAUUACCGCGGAUCUGCGCGGAUAUGAUGCUGCCCAGCCAU----------ACCUAAAAAUCUUUGGUCUUCGGUGUACGUCUUAU-------GUACGAAUAU ((((((((((((((((......))))).((((..(((....))))))----------)............)))))))))))((((((...))-------))))...... ( -30.90) >DroYak_CAF1 16842 109 + 1 GCCGAAGAUUACCGCGGAUCUGCGCGGAUAUAUAUAUACUCGUACAUACAUAGAUAGUACUAAAAAUCAUUGCUCUUUGGUCUACGGCAUAUACUUACUAUACUCGUAU ((((.(((((((((((......)))))..............((((...........)))).................)))))).))))..................... ( -23.90) >consensus GCCGAAGAUUACCGCGGAUCUGCGCGGAUAUGAUGCUGCCCAGCCAU__________ACCUAAAAAUCUUUGGUCUUCGGUGUACGUCUUAU_______GUACGAAUAU ((((((((((((((((......))))).......(((....)))..........................)))))))))))............................ (-22.67 = -22.05 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:55 2006