Locus 2565

Sequence ID X_DroMel_CAF1
Location 6,887,780 – 6,887,886
Length 106
Max. P 0.515460
window4191

overview

Window 1

Location 6,887,780 – 6,887,886
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.13
Mean single sequence MFE -22.86
Consensus MFE -15.03
Energy contribution -14.35
Covariance contribution -0.68
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.515460
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6887780 106 - 22224390
UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC--------------UGCGCUGCACUAAUUAAUGCACAUUUAUUCGCGUAAUUACGCGCAGCAUGCUACUAAUUCUUUC
..........................((((..((((....((--------------((((.((((........)))))........((((....)))))))))..))))))))....... ( -22.40)
>DroSec_CAF1 12200 106 - 1
UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC--------------UGGGCUGCACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAUGCUCCUAAUUCUUUC
.............................((((((....(((--------------...(((((.(((((((.(((..........))))))))).).)))))..))).))))))..... ( -19.90)
>DroSim_CAF1 12914 106 - 1
UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC--------------UGGGCUGCACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAUGCUACUAAUUCUUUC
.............................((((((...((((--------------...(((((.(((((((.(((..........))))))))).).)))))..))))))))))..... ( -21.20)
>DroEre_CAF1 11461 106 - 1
UUCGUUCUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUAGU--------------CGGCCUGCGCUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCGGCGUGCUACCAAUUCUUUG
.............................((((((...((((--------------..(((.((((((((((.(((..........))))))))).)))))))..))))))))))..... ( -24.40)
>DroYak_CAF1 13470 109 - 1
-----------AUUUUCCAUUUCAAUUUAGAUUGGCUUUAGUUUGGAUUGGUACAUUGGGCUGUACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAGGCUGCUAAUUCUUUC
-----------..................(((((((...((((((((((((((((......))))))))))..............(((((....)))))...)))))))))))))..... ( -26.40)
>consensus
UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC______________UGGGCUGCACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAUGCUACUAAUUCUUUC
.............................((((((...((((.................(((((.(((((((.(((..........))))))))).).)))))..))))))))))..... (-15.03 = -14.35 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:52 2006