Locus 2563

Sequence ID X_DroMel_CAF1
Location 6,884,026 – 6,884,125
Length 99
Max. P 0.685275
window4188

overview

Window 8

Location 6,884,026 – 6,884,125
Length 99
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 85.12
Mean single sequence MFE -26.54
Consensus MFE -18.70
Energy contribution -19.82
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.70
SVM decision value 0.32
SVM RNA-class probability 0.685275
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6884026 99 - 22224390
AUGUAACUUUUA-------------UUCACCAAAUAUAGCUACACUUUUGUCCCUGUGUUUGGCAUGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA
............-------------....((((((((((..(((....)))..))))))))))..(((.((((((.(..((((.((((...)))))))).).)))))).))) ( -28.40)
>DroSec_CAF1 8224 99 - 1
GUGUAACUUUUA-------------UUCACCAAAUAUAGCUACACUUUUGUCUCUGUGUGUGGCAUGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA
............-------------.............(((((((............))))))).(((.((((((.(..((((.((((...)))))))).).)))))).))) ( -26.30)
>DroSim_CAF1 8950 99 - 1
AUGUAACUUUUA-------------UUCACCAAAACUAGCUACACUUUUAUCUCUGUGUGUGGCACGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA
............-------------.............(((((((............)))))))..((.((((((.(..((((.((((...)))))))).).)))))).)). ( -26.40)
>DroEre_CAF1 7941 99 - 1
AAGUCACUUCUA-------------UUCACCAAAUAUAGGUAUUCUAUUCUCUCUGUGUGUGGCAUGUGAUUUGCCCCUAGCUUCGACUCAGUUGGGCUUGGGAAAAUGGCA
(((((((..(((-------------(.(((.....((((.....)))).......))).))))...)))))))((((((((((.((((...))))))).)))).....))). ( -23.80)
>DroYak_CAF1 9515 112 - 1
AAGUCACUUCUACUCACCAACUAUAUUCACCAAAUAAGGCUACACUUUUGUCUCAGUGUGUGGCAUGUGACUUGCCCUUAGCUUCGACUCAGUGGAGCUUGUGAAAAUGGCA
(((((((.............((.((((.....))))))(((((((............)))))))..)))))))(((...(((((((......))))))).((....))))). ( -27.80)
>consensus
AUGUAACUUUUA_____________UUCACCAAAUAUAGCUACACUUUUGUCUCUGUGUGUGGCAUGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA
......................................(((((((............)))))))..((.((((((.(..((((.((((...)))))))).).)))))).)). (-18.70 = -19.82 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:49 2006