| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,867,628 – 6,867,740 |
| Length | 112 |
| Max. P | 0.993730 |
| Location | 6,867,628 – 6,867,740 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.09 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -24.91 |
| Energy contribution | -25.97 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.993730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6867628 112 + 22224390 UGUGUUAAGUGGUCCA-AAAAAAAUUGACUCAAAUUGACUCUGUGCCAGCACAGAAAAAUUAAUGUGUGUGCGACAGAGAUAGUUGGG------AAAUGGCAUAGAGU-UUGUUGCGAGU ................-..........((((.(((.(((((((((((((((((.(........).))))).((((.......))))..------...)))))))))))-).)))..)))) ( -31.70) >DroSec_CAF1 11333 99 + 1 -----------GUCCA-AAAAAAAUUGACUCAAAUUGACUCUGUGCCAGCACAGA--AAUGAAUGUGUGUGCGACAGAGAUAGUUGGG------AAAUGGCAUAGAGU-UAGUUGUGAGU -----------.....-..........((((((((((((((((((((((((((..--......)))))...((((.......))))..------...)))))))))))-))))).))))) ( -36.00) >DroEre_CAF1 8228 110 + 1 UGUGUUAGGUGGUCCA-AAAAAAAUUGACUCAAAUUGACUCUGUGCCAGCACAGA--AACUAAAGUGUGUGCGACAGAGAUAGCUGGG------AAAUGGAAUAGAGU-UAGUUGUGAGU .......((....)).-..........(((((((((((((((((.((((((((..--.((....)).)))))..(((......)))..------...))).)))))))-))))).))))) ( -32.50) >DroYak_CAF1 8394 118 + 1 UGUGUUAAGUGGUCCGAAAAAAAAUUGACUCAAAUUGACUCUGUGCCAGCACAGA--AAUGAAGGUGUGUGCGACAGAGAUAGUUGGGAAUUGGAAAUGGAAUAGAGUUUAGUUGUGUGU ...........................((.(((...((((((((.((((((((.(--........).)))))(((.......)))............))).))))))))...))).)).. ( -23.70) >consensus UGUGUUAAGUGGUCCA_AAAAAAAUUGACUCAAAUUGACUCUGUGCCAGCACAGA__AAUGAAUGUGUGUGCGACAGAGAUAGUUGGG______AAAUGGAAUAGAGU_UAGUUGUGAGU ...........................((((((((((((((((((((((((((.(..........).)))))..(((......)))...........))))))))))).))))).))))) (-24.91 = -25.97 + 1.06)
| Location | 6,867,628 – 6,867,740 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.09 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -15.91 |
| Energy contribution | -16.29 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6867628 112 - 22224390 ACUCGCAACAA-ACUCUAUGCCAUUU------CCCAACUAUCUCUGUCGCACACACAUUAAUUUUUCUGUGCUGGCACAGAGUCAAUUUGAGUCAAUUUUUUU-UGGACCACUUAACACA (((((......-(((((.(((((...------....((.......)).(((((..............)))))))))).))))).....)))))(((......)-)).............. ( -19.74) >DroSec_CAF1 11333 99 - 1 ACUCACAACUA-ACUCUAUGCCAUUU------CCCAACUAUCUCUGUCGCACACACAUUCAUU--UCUGUGCUGGCACAGAGUCAAUUUGAGUCAAUUUUUUU-UGGAC----------- (((((......-(((((.(((((...------....((.......)).(((((..........--..)))))))))).))))).....)))))(((......)-))...----------- ( -20.60) >DroEre_CAF1 8228 110 - 1 ACUCACAACUA-ACUCUAUUCCAUUU------CCCAGCUAUCUCUGUCGCACACACUUUAGUU--UCUGUGCUGGCACAGAGUCAAUUUGAGUCAAUUUUUUU-UGGACCACCUAACACA (((((......-(((((...(((...------..(((......)))..(((((.((....)).--..))))))))...))))).....)))))(((......)-)).............. ( -16.80) >DroYak_CAF1 8394 118 - 1 ACACACAACUAAACUCUAUUCCAUUUCCAAUUCCCAACUAUCUCUGUCGCACACACCUUCAUU--UCUGUGCUGGCACAGAGUCAAUUUGAGUCAAUUUUUUUUCGGACCACUUAACACA .........................(((................(((((((((..........--..))))).))))..((.((.....)).))...........)))............ ( -14.70) >consensus ACUCACAACUA_ACUCUAUGCCAUUU______CCCAACUAUCUCUGUCGCACACACAUUAAUU__UCUGUGCUGGCACAGAGUCAAUUUGAGUCAAUUUUUUU_UGGACCACUUAACACA (((((.......(((((.(((((.............((.......)).(((((..............)))))))))).))))).....)))))........................... (-15.91 = -16.29 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:46 2006