Locus 2554

Sequence ID X_DroMel_CAF1
Location 6,859,473 – 6,859,568
Length 95
Max. P 0.791366
window4166

overview

Window 6

Location 6,859,473 – 6,859,568
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.68
Mean single sequence MFE -32.16
Consensus MFE -29.32
Energy contribution -29.36
Covariance contribution 0.04
Combinations/Pair 1.11
Mean z-score -1.29
Structure conservation index 0.91
SVM decision value 0.59
SVM RNA-class probability 0.791366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6859473 95 - 22224390
AUGCGACGCACCGCCUUCUCGUUGUGGUAGGCCACCUGGCCGGGCUCCAUGUCCGGGGUCUUCUUCAGAUUCUCCCACAUGGUGUACACCACCUC
..(((......))).........(((((.((((....))))(..(.((((((..(((((((.....)))))))...)))))).)..))))))... ( -33.10)
>DroSec_CAF1 2637 95 - 1
AUGCGACGCACCGCCUUCUCGUUGUGGUAGGACACCUGGCCGGGCUCCAUGUCCGGGGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC
..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. ( -32.20)
>DroSim_CAF1 2637 95 - 1
AUGCGACGCACCGCCUUCUCGUUGUGGUAGGACACCUGACCGGGCUCCAUGUCCGGGGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC
..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. ( -33.10)
>DroEre_CAF1 2716 95 - 1
AUGCGAUGCACCGCCUUCUCGUUGUGGUAGGAUACUUGGCCGGGCGCCAUGUCCGGUGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC
..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. ( -29.80)
>DroYak_CAF1 2724 95 - 1
AUGCGACGCACCGCCUUCUCGUUGUGGUACGCCACCUGGCCGGGCUCCAUGUCCGGCGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC
..(((......))).........(((((((((((..(((((((((.....)))))))..........((....))))..))))))..)))))... ( -32.60)
>consensus
AUGCGACGCACCGCCUUCUCGUUGUGGUAGGACACCUGGCCGGGCUCCAUGUCCGGGGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC
..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. (-29.32 = -29.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:30 2006