Locus 2553

Sequence ID X_DroMel_CAF1
Location 6,848,354 – 6,848,465
Length 111
Max. P 0.798027
window4165

overview

Window 5

Location 6,848,354 – 6,848,465
Length 111
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -30.75
Consensus MFE -18.02
Energy contribution -21.14
Covariance contribution 3.12
Combinations/Pair 1.17
Mean z-score -2.36
Structure conservation index 0.59
SVM decision value 0.61
SVM RNA-class probability 0.798027
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6848354 111 - 22224390
AAAUGGAUUGGCAAUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUAAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGAAACCGUUGAACCAAUCCAAUCCAAAA-AAAACCAA
...((((((((((((((...((((((..((((((((...((((..............))))..))))))))..))))))))))))..))))))))........-........ ( -28.44)
>DroSec_CAF1 28313 108 - 1
AAAUGGAUUGGCCAUGGGAUUUUCGGUCCAGUUGGGAAAUUCUUGAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCAAUCCAAA----AACCAA
...((((((((...(((..((..(((((((((..((.....))..)))....(((((.....))))).........))))))..)).)))..))))))))..----...... ( -33.60)
>DroSim_CAF1 28360 108 - 1
AAAUGGAUUGGCCCUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUGAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCAAUCCAAA----AACCAA
...((((((((...(((..((..(((((((((((((.....)))))))....(((((.....))))).........))))))..)).)))..))))))))..----...... ( -35.00)
>DroEre_CAF1 28803 112 - 1
AAAUGGAUUGGCUGUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUGGUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCUAUCCAAUCCGAUACCAA
...((((((((..((((((((..(((((((..((((.....))))..)....(((((.....))))).........)))))).......))))))))))))))))....... ( -34.40)
>DroYak_CAF1 29523 90 - 1
GAAUGGAUUGGCUGUGGGAUUUUCGGUCCAGUCGUUAAAUUCUUGGUUUUGGCAAAUGGGAAAUCUGAUUGUCUUGG----------------------AAUCCGGAACCAA
((((.(((((((((.........))).)))))).....)))).(((((((((....(((((.(......).))))).----------------------...))))))))). ( -22.30)
>consensus
AAAUGGAUUGGCCAUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUGAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCAAUCCAAA____AACCAA
...((((((((...(((......((((((...(((((...((..((((((.........)))))).))...))))))))))).....)))..))))))))............ (-18.02 = -21.14 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:29 2006