| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,843,179 – 6,843,283 |
| Length | 104 |
| Max. P | 0.955531 |
| Location | 6,843,179 – 6,843,283 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.81 |
| Mean single sequence MFE | -34.14 |
| Consensus MFE | -26.20 |
| Energy contribution | -27.80 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.955531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6843179 104 + 22224390 ACGGGGGGUUAAAUGCAUCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGACAUUAAAACUAAAUCAUAAAUCUUGGGUGUGCC----------AAACAGGCUUAACCCCAGA ..((..((((.(((((((((((((((.(....).))).....)))).)))).))))..))))...)).....(((.((((..(((----------.....)))...)))).))) ( -33.10) >DroSec_CAF1 23153 106 + 1 ACGGGGGGUUAAAUGCAGCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGAAAU------UAAAUCAUAAAUCUUGGUUGUGUCGCCGAAA--AAAACAGGCUUAACCCCAGA ....((((((((..((..((((.(((.(....).)))((((..(((((((.....------..........))).))))..))))))))...--.......))))))))))... ( -36.36) >DroSim_CAF1 23218 107 + 1 ACGGGGGGUUAAAUGCAGCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGAAAU------UAAAUCAUAAAUCUGGGUUGUGUCGCUGAAAA-AAAACAGGCUUAACCCCAGA ....((((((((.(((((((((((((.(....).))).......((((((.....------..........))))))....))))))))....-....))...))))))))... ( -36.36) >DroEre_CAF1 23530 114 + 1 ACGGGGGGUUAAAUGCAUCGCCAGACUCGAGAGCGUCGGCGUUGCCAGAUGACAUUAAUAUUAAAUCAUAAAUCUCGGCGAUGCUGCUGAAAACAAAACAGGCUUAACACCAGA ..((...(((((..((((((((.(((.(....).)))(((...)))..............................)))))))).(((............)))))))).))... ( -31.50) >DroYak_CAF1 24051 114 + 1 ACGGGGGGUUAAAUGCAUCGGCAGACUCGUAAGCGUCAGCGUUGCCAGAUGACAUUAAAAUUUAAACAUAAAUCUCGGUUAUGCUGGUGAAAAAUCCACAAGCUUAACCCCAGA ....((((((((..((....((.(((.(....).))).)).(..(((((((((......(((((....)))))....))))).))))..)...........))))))))))... ( -33.40) >consensus ACGGGGGGUUAAAUGCAUCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGACAUUAA_A_UAAAUCAUAAAUCUCGGUUGUGCCGCUGAAAA_AAAACAGGCUUAACCCCAGA ....((((((((..((.......(((.(....).)))(((((.(((((((.....................)))).))).)))))................))))))))))... (-26.20 = -27.80 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:28 2006