| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,833,165 – 6,833,268 |
| Length | 103 |
| Max. P | 0.545011 |
| Location | 6,833,165 – 6,833,268 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.13 |
| Mean single sequence MFE | -31.13 |
| Consensus MFE | -20.65 |
| Energy contribution | -22.23 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6833165 103 + 22224390 GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUCAAGCUGGCCACCACGAUCUCGGUGACAGCCACGCCCAUAAAAGA .......(((....(((.((((((....)))))).))).((-(((....((.......))..((((..((((........)))).))))...)))))...))). ( -34.00) >DroVir_CAF1 153630 92 + 1 GUAAUUGUCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG--UCAUGCGGCGCUAAUUUGGCU-CUACGCCUGGA-----CGGACAACACCACCCAAA-A--- ....((((((....(((.((((((....)))))).)))..(--((..(((..(((.....))).-...)))...))-----)))))))...........-.--- ( -29.10) >DroSim_CAF1 13367 101 + 1 GUAAUUGCUUAAAUUGAAAUCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUCGAGCUGGACACCACGAUCUCGGUGACAGAGUCGCCCAUA--AGA .....(((((((..(((...((((....))))...))))))-)))).(((((.((......))(((..((((........)))).))).))))).....--... ( -28.20) >DroEre_CAF1 13503 102 + 1 GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUUGAGCUGGCCACCCCGAUCUCGGUGACAGCCACGCCCUUA-AAGA ((...(((((((..(((.((((((....)))))).))))))-))))....)).......((.((((..((((........)))).))))))........-.... ( -33.00) >DroYak_CAF1 13676 103 + 1 GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUCAAGCUGGCCACCACGAUCUCGGUGACAACCACGCCCUUAAAAGA ((...(((((((..(((.((((((....)))))).))))))-))))....))..........(((((.((((........))))....))).)).......... ( -29.60) >DroAna_CAF1 16496 102 + 1 GUAAUUGUCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGGGCAUGCGACACUAAUUCGAGCUGGGCA--ACGAUCUCUGUGACAGCCACGCCCUAAAAACG ..............(((.((((((....)))))).)))(((((((...............(((.(.(...--.).).))).(((.....))))))))))..... ( -32.90) >consensus GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG_GGCAUGCGACACUAAUUCGAGCUGGCCACCACGAUCUCGGUGACAGCCACGCCCAUA_AAGA ((...((((.....(((.((((((....)))))).)))....))))....))..........((((..((((........)))).))))............... (-20.65 = -22.23 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:26 2006