Locus 2547

Sequence ID X_DroMel_CAF1
Location 6,826,116 – 6,826,220
Length 104
Max. P 0.888385
window4157

overview

Window 7

Location 6,826,116 – 6,826,220
Length 104
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 87.45
Mean single sequence MFE -25.65
Consensus MFE -20.08
Energy contribution -20.84
Covariance contribution 0.76
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.78
SVM decision value 0.95
SVM RNA-class probability 0.888385
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6826116 104 + 22224390
CAAUUCCAAUUGGCUCCAAGGGGCUUUAAUCAAAAUGAUGCCUCGGGGCUGACAUC-----UCGCUUAAUCUCGGGGGAUCGUAUU----AUAGUUAUACAACUAAUCCCACU
.........(((....)))((((...........(((((.(((((((..(((....-----....)))..))))))).)))))...----.(((((....))))).))))... ( -26.80)
>DroSec_CAF1 6370 104 + 1
CAGAUCCAAUUGGCUCCAAUAGGCUUUAAUCAAAAUCAUGCCUCGAGGCUGACAUC-----CCGCUUAAUCUCGGGGGAUCGUAUU----AUAGUUAUACAACUAAUCCCAAU
..(((((..(..((..(...((((...............)))).)..))..)...(-----(((........))))))))).....----.(((((....)))))........ ( -24.56)
>DroSim_CAF1 6374 104 + 1
CAGAUCCAAUUGGCUCCAAUGGGCUUUAAUCAAAAUGAUGCCUCGAGGCUGACAUC-----UCGCUUAAUCUCGGGGGAUCGUAUU----AUAGUUAUACAACUAAUCCCAAU
..((.((....)).))...((((...........(((((.(((((((..(((....-----....)))..))))))).)))))...----.(((((....)))))..)))).. ( -28.10)
>DroEre_CAF1 6680 101 + 1
CAAUACCAAUUGACUCAAAUGGGCUUUAAUCAAAAUGAUGCCCCGAGGCUGAC--------UCGUUUAAUCUCGGGGGAUCGUCUU----AUAGUUAUACAACUAAUCCCCAC
((((....)))).......((((...........(((((.(((((((..(((.--------....)))..))))))).)))))...----.(((((....)))))...)))). ( -28.70)
>DroYak_CAF1 6549 113 + 1
CAAUUCCAAUUGGCUCCAAUAAGCUUUAAUCAAAAUGAUGCCUCGCGGCUGACAUCUCAUUUCGUCUAAUCUCGGGGGAUCGUCUUUUAAAUAGUUAUACAACUAAUCCCAAC
.........((((...........(((((.....(((((.(((((.((..(((..........)))...)).))))).)))))...)))))(((((....)))))...)))). ( -20.10)
>consensus
CAAUUCCAAUUGGCUCCAAUGGGCUUUAAUCAAAAUGAUGCCUCGAGGCUGACAUC_____UCGCUUAAUCUCGGGGGAUCGUAUU____AUAGUUAUACAACUAAUCCCAAU
...........(((((....))))).........(((((.(((((((..(((.............)))..))))))).)))))........(((((....)))))........ (-20.08 = -20.84 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:22 2006