Locus 2545

Sequence ID X_DroMel_CAF1
Location 6,822,359 – 6,822,454
Length 95
Max. P 0.534439
window4153

overview

Window 3

Location 6,822,359 – 6,822,454
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 74.57
Mean single sequence MFE -25.10
Consensus MFE -15.90
Energy contribution -17.18
Covariance contribution 1.28
Combinations/Pair 1.14
Mean z-score -1.16
Structure conservation index 0.63
SVM decision value 0.00
SVM RNA-class probability 0.534439
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6822359 95 - 22224390
GUCAACACGUUCUGCUGGAUCCACAGCACUUUCACCAUGCCGGACGCUUUUCGCAGACAGGUGAGUUGGGGAUUCGGAUGGGAAU----UGAAUGUUCA
......(((((((((((......)))))..(((.((((.((((((.((.(((((......)))))..)).).)))))))))))).----.))))))... ( -30.70)
>DroPse_CAF1 3364 74 - 1
GUGAACACGUUCUGCUGGAUCCACAGCACGUUCACCAUGCCGGAUGCGUUUCGCAGACAGGUAAGA-------------------------ACUCUCCA
((((((......(((((......))))).))))))..(((((..((((...))))..).))))...-------------------------........ ( -21.20)
>DroSec_CAF1 2642 95 - 1
GUCAACACGUUCUGCUGGAUCCACAGCACCUUCACCAUGCCGGACGCCUUUCGCAGACAGGUGAGUUGGGGAUUUGGAUGGAAAU----CGAAUGUUUC
......(((((((((((......)))))......((((.((((((.((.(((((......)))))..)).).)))))))))....----.))))))... ( -29.40)
>DroSim_CAF1 2678 84 - 1
GUCAACACGUUCUGCUGGAUCCACAGCACCUUCACCAUGCCGGAUGCCUUUCGCAGACAGGUGAGUUGGGGAUUCGG---------------AUUUUUC
..............((((((((.((((....(((((.(((.(((.....))))))....))))))))).))))))))---------------....... ( -24.60)
>DroAna_CAF1 3606 99 - 1
GUGAACACCUUUUGCUGGAUCCACAGCACCUUCACCAUGCCGGAUGCUUUCCGCAGACAGGUGAGUUUAUUAUUUUAAUAACUAUAACUAAAAUUUACA
((((((......(((((......)))))...(((((.(((.(((.....))))))....)))))))))))............................. ( -23.50)
>DroPer_CAF1 3137 74 - 1
GUGAACACGUUCUGCUGGAUCCACAGCACGUUCACCAUGCCGGAUGCGUUUCGCAGACAGGUAAGA-------------------------ACUCUCCA
((((((......(((((......))))).))))))..(((((..((((...))))..).))))...-------------------------........ ( -21.20)
>consensus
GUCAACACGUUCUGCUGGAUCCACAGCACCUUCACCAUGCCGGAUGCCUUUCGCAGACAGGUGAGUUGGGGAUU_GG______________AAUCUUCA
.(((((......(((((......)))))...(((((.(((.(((.....))))))....)))))))))).............................. (-15.90 = -17.18 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:18 2006