Locus 2542

Sequence ID X_DroMel_CAF1
Location 6,808,137 – 6,808,244
Length 107
Max. P 0.553171
window4149

overview

Window 9

Location 6,808,137 – 6,808,244
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.17
Mean single sequence MFE -39.87
Consensus MFE -25.20
Energy contribution -26.53
Covariance contribution 1.34
Combinations/Pair 1.18
Mean z-score -1.78
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.553171
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6808137 107 - 22224390
AUUGACUCCACCCAAAAUGCGUCUUGUAGUGCCGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUAAGGCGCUGCAGGGCGUUAGGGAAUUUGGCCUUGUUUUUGGCUA
..........(((.....((((((((((((((((((((...(((......)))...)))))....)))))))))))))))..)))....(((((........))))) ( -43.90)
>DroPse_CAF1 91391 95 - 1
AGAGUG----GGCAAAGUGCGCCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCGAAGAGCUUCAAGCGCUGAAGUG--UU-GGAAACUUGGCCCUGGUCCU-----
.((.((----(((.(((((((((....))))).(((((.......)))))..((((...((((((.....)))))).--))-))..)))).)))).).))..----- ( -35.00)
>DroSec_CAF1 77106 107 - 1
AUUGACUCCACCCAAAAUGCGUCUUGUCGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUCAGGCGCUGCAAGGCGUUGGGGAAUUUGGCCUUGUUUUUGGCUA
..........((((....(((((((((.(((((((......))((((..((.....))..)))).))))).))))))))))))).....(((((........))))) ( -40.20)
>DroEre_CAF1 22960 107 - 1
AUUGAUGCCACCCAAAGUGCGUCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUUAGGCGCUGCAGGGCGUUGGGAAAUUUGGCCUUGUUUUUGGCUA
..........((((....((((((((..((((((((((...(((......)))...)))))....)))))..)))))))))))).....(((((........))))) ( -42.20)
>DroYak_CAF1 71369 107 - 1
AUUGAUGCCACCCAAAAUGCGUCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUCAGGCGCUGCAGGGCGUUGGGGAAUUUGGCCUUGCUUUUGGCUA
..........((((....((((((((..(((((((......))((((..((.....))..)))).)))))..)))))))))))).....(((((........))))) ( -42.90)
>DroPer_CAF1 104662 95 - 1
AGAGUG----GGCAAAGUGCGCCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCGAAGAGCUUCAAGCGCUGAAGUG--UU-GGAAACUUGGCCCUGGUCCU-----
.((.((----(((.(((((((((....))))).(((((.......)))))..((((...((((((.....)))))).--))-))..)))).)))).).))..----- ( -35.00)
>consensus
AUUGAC_CCACCCAAAAUGCGUCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUCAGGCGCUGCAGGGCGUUGGGAAAUUUGGCCUUGUUUUUGGCUA
...........(((((..((((((((((((((((((((...(((......)))...)))))....))))))))))))))).......)))))............... (-25.20 = -26.53 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:15 2006