| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,774,174 – 6,774,273 |
| Length | 99 |
| Max. P | 0.744032 |
| Location | 6,774,174 – 6,774,273 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.36 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -20.17 |
| Energy contribution | -21.17 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6774174 99 + 22224390 AUGCAUUAUGGCGAGUAUCAUUAAGUACAGUUGUCCCCAAAAAGUU---G-----------GCCCGGCAAGAAAUUGCGGGGCGUGUG-------CGAUUGUAAAACAUGCAUUAAUGUG ..((((((..(((.((.........((((((((..(.(((....))---)-----------((((.((((....)))).))))..)..-------))))))))..)).)))..)))))). ( -31.20) >DroEre_CAF1 62173 98 + 1 AUGCAUUAUGGCGAGUGUCAUUAAGUACAGUUGUCCCCAA-AAGUU---G-----------GGCCAGUAAGAAAUUGCGGGGCGUGUG-------CAAUUGUAAAACAUGCAUUAAUGUU ((((((.(((((....)))))....((((((((..((((.-....)---)-----------)(((.((((....))))..)))..)..-------))))))))....))))))....... ( -28.00) >DroAna_CAF1 78752 118 + 1 AUGCAUUAUGGCGAGUGUCAUUAAGUACAGUUGUCCCCAA-AAGUUCUCGGCUCUGGUCAUGGCC-AUAAGAAGUUGUGGGGCGUGUGUGUGGGGCGAUUGUAAAACAUGCAUUAAUGUG ((((((.(((((....)))))....((((((((((((((.-..(((((((((((((((....)))-...)).))))).))))).....)).))))))))))))....))))))....... ( -38.10) >consensus AUGCAUUAUGGCGAGUGUCAUUAAGUACAGUUGUCCCCAA_AAGUU___G___________GGCC_GUAAGAAAUUGCGGGGCGUGUG_______CGAUUGUAAAACAUGCAUUAAUGUG ..((((((.(((((.((((.....).))).)))))............................((.((((....)))).))((((((..................))))))..)))))). (-20.17 = -21.17 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:11 2006