| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,773,050 – 6,773,168 |
| Length | 118 |
| Max. P | 0.971422 |
| Location | 6,773,050 – 6,773,168 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.67 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -15.98 |
| Energy contribution | -14.55 |
| Covariance contribution | -1.43 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6773050 118 + 22224390 -GAGCGAUGGCGAUAGCCAUCAGAGAGUGAGACGGCUGAUGAGGGGGCCGAAAGAGAGAUAGCAAGCCGAAGCUAUGCAAAGUUCAUAGUAUAAUUUUCAACGCCGA-ACGGAAGUUUAA -(.((((((((....)))))).((((((....(((((..((..(...((....).)...)..)))))))..((((((.......))))))...))))))...)))((-((....)))).. ( -35.70) >DroEre_CAF1 61118 115 + 1 AGAGCGAUGGCGAUAGCCAUCAGAGA--GAGAUGGCUGAUGAGUGGGCC--AAGAGAGAUAGCAAGCCCAAGCUAUGCAAAGUUCAUAGCAUAAUUUCCAGUGCCGA-ACGGAAGUUUAA .(.(((.(((((.((((((((.....--..)))))))).))..(((((.--..............))))).((((((.......)))))).......))).))))((-((....)))).. ( -35.06) >DroAna_CAF1 77134 116 + 1 -GCGAGAUGGUA---AAUAGAAGAGAAAGAGAUAGCAAAUAAAGUGUGAAAGAGACAGAAACAAAGCUAAGGUCAUGCAUAGUUCAUGGCAUAAUUUUGAGAAUCGAAACGAAAGUUGAA -.((((((....---.................((((........(((.......)))........))))..((((((.......))))))...))))))........(((....)))... ( -14.49) >consensus _GAGCGAUGGCGAUAGCCAUCAGAGA__GAGAUGGCUGAUGAGGGGGCC_AAAGAGAGAUAGCAAGCCAAAGCUAUGCAAAGUUCAUAGCAUAAUUUUCAGAGCCGA_ACGGAAGUUUAA .....((((((....))))))...........(((((.........((.............)).)))))..((((((.......))))))..................((....)).... (-15.98 = -14.55 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:10 2006