Locus 2537

Sequence ID X_DroMel_CAF1
Location 6,770,282 – 6,770,380
Length 98
Max. P 0.544643
window4143

overview

Window 3

Location 6,770,282 – 6,770,380
Length 98
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.84
Mean single sequence MFE -22.23
Consensus MFE -19.16
Energy contribution -18.50
Covariance contribution -0.66
Combinations/Pair 1.07
Mean z-score -1.17
Structure conservation index 0.86
SVM decision value 0.02
SVM RNA-class probability 0.544643
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6770282 98 - 22224390
----------------------UUUUGGCAAUGGCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAUUC
----------------------...........(((((((........(((..((....))..)))..((((((....(((((((.........)))))))))))))..))))))).... ( -19.90)
>DroEre_CAF1 58923 97 - 1
----------------------UUUU-GCAAUGGCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAUUC
----------------------...(-((((((((........)))(((.....(((((....)))))((((((....(((((((.........))))))))))))).)))))))))... ( -20.60)
>DroAna_CAF1 74897 120 - 1
CCUCGUGCCUCUCCACAUCCUCUUGUGUCGUUGCCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAAUC
....(((......))).......((((.((..((((.....))))..))....)))).((((((.(..((((((....(((((((.........)))))))))))))...).)))))).. ( -26.20)
>consensus
______________________UUUUGGCAAUGGCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAUUC
.............................((((.((((((........(((..((....))..)))..((((((....(((((((.........)))))))))))))..)))))))))). (-19.16 = -18.50 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:09 2006