| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,747,567 – 6,747,676 |
| Length | 109 |
| Max. P | 0.924352 |
| Location | 6,747,567 – 6,747,676 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.49 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -14.56 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6747567 109 + 22224390 ------CUCCGUCCCCC---UGCCUUUCGGCCAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCU--UUUUCUGGCCUCGCGCGAGGC ------((((((.....---.((((((((((.......(((((((.......))))).)).....)))))))))).(.((((...(((........)--))....)))).)))).))).. ( -33.20) >DroEre_CAF1 36823 103 + 1 ------CU-CGUCCCCC---UGCCUUUGGGCCAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCA--UUUUCUCGCCCCAUUC----- ------..-........---......((((((......(((((((.......))))).)).....(((....)))...)))))).............--................----- ( -23.60) >DroAna_CAF1 41497 116 + 1 UUAUUUCCCCAUCAACUUUUCGGCUUUGGGCUAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCC--UUUUUUGUCUGUG--CGACUC .....................(....((((((......(((((((.......))))).)).....(((....)))...))))))....)........--......(((....--.))).. ( -23.00) >DroPer_CAF1 96325 102 + 1 UCUUUUGGCCACUGCCCCUCCGG---UUGGCCUUAUUAACCUUGGUUACACUUCAAGCGUCACUUGCCCAAAC-UCGCUGCCUAUAAACAUUUCUCUCAUUUUUUG-------------- ......(((((..(((.....))---))))))....((((....)))).......((((..............-.))))...........................-------------- ( -15.46) >consensus ______CUCCAUCCCCC___CGCCUUUGGGCCAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCU__UUUUCUGGCC_CG__C_____ ..........................((((((......(((((((.......))))).)).....(((....)))...)))))).................................... (-14.56 = -15.50 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:02 2006