| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 854,476 – 854,577 |
| Length | 101 |
| Max. P | 0.811298 |
| Location | 854,476 – 854,577 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.30 |
| Mean single sequence MFE | -23.27 |
| Consensus MFE | -19.79 |
| Energy contribution | -20.57 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 854476 101 + 22224390 UUCCUCGUCAUUAAUCAAUCUCCUAGAAGAG--CCCGCAAAGCGGAUAAUAUUCUCUCAAGGAGAGAUUAGGUUGUGUAUGGCAUAUUUUCCCUACGUUCAGU ......(((((....((....(((((.....--.((((...)))).......((((((...)))))))))))...)).))))).................... ( -21.20) >DroSec_CAF1 57395 87 + 1 UUCCUCGUCAUUAAUCAAUCUCCUAGAGGAGAUCCCAUAAAGCGGAUAAUAUCCUCUCAAGGAGAGAUUAGAUUGUGUAU----------------GUUCAGU .....((((((.((((..((((((((((((.(((((.....).))))....))))))..)))))).....))))))).))----------------)...... ( -24.40) >DroSim_CAF1 53515 87 + 1 UUCCUCGUCAUUAAUCAAUCUCCUAGAGGAGAUCCCAUAAAGCGGAUAAUAUCCUCUCAAGGAGAGAUUAGGUUGUGUAU----------------GUUCAGU ...(.((...((((((..((((((((((((.(((((.....).))))....))))))..))))))))))))..)).)...----------------....... ( -24.20) >consensus UUCCUCGUCAUUAAUCAAUCUCCUAGAGGAGAUCCCAUAAAGCGGAUAAUAUCCUCUCAAGGAGAGAUUAGGUUGUGUAU________________GUUCAGU ..........((((((..((((((((((((.(((((.....).))))....))))))..))))))))))))................................ (-19.79 = -20.57 + 0.78)
| Location | 854,476 – 854,577 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 84.30 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -18.64 |
| Energy contribution | -18.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 854476 101 - 22224390 ACUGAACGUAGGGAAAAUAUGCCAUACACAACCUAAUCUCUCCUUGAGAGAAUAUUAUCCGCUUUGCGGG--CUCUUCUAGGAGAUUGAUUAAUGACGAGGAA .......(((.((........)).)))......(((((((((((.(((((.......(((((...)))))--)))))..))))))..)))))........... ( -23.41) >DroSec_CAF1 57395 87 - 1 ACUGAAC----------------AUACACAAUCUAAUCUCUCCUUGAGAGGAUAUUAUCCGCUUUAUGGGAUCUCCUCUAGGAGAUUGAUUAAUGACGAGGAA .......----------------..........(((((((((((..((((((....((((........)))).))))))))))))..)))))........... ( -21.70) >DroSim_CAF1 53515 87 - 1 ACUGAAC----------------AUACACAACCUAAUCUCUCCUUGAGAGGAUAUUAUCCGCUUUAUGGGAUCUCCUCUAGGAGAUUGAUUAAUGACGAGGAA .......----------------..........(((((((((((..((((((....((((........)))).))))))))))))..)))))........... ( -21.70) >consensus ACUGAAC________________AUACACAACCUAAUCUCUCCUUGAGAGGAUAUUAUCCGCUUUAUGGGAUCUCCUCUAGGAGAUUGAUUAAUGACGAGGAA .................................(((((((((((..((((((.....((((.....))))...))))))))))))..)))))........... (-18.64 = -18.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:04 2006