Locus 2527

Sequence ID X_DroMel_CAF1
Location 6,733,872 – 6,733,980
Length 108
Max. P 0.520390
window4125

overview

Window 5

Location 6,733,872 – 6,733,980
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.88
Mean single sequence MFE -19.16
Consensus MFE -0.98
Energy contribution -2.58
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.05
SVM decision value -0.03
SVM RNA-class probability 0.520390
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6733872 108 + 22224390
CAAAUGGAAGCUUCUUUCA----UUUACAUCCUGCUCUUAUUGAUUCUGAUAUC--CAUUUUUGCUUUGUUUU------GAUUUCGAUCAAUUAAGUGCAGAAUUUUCCUAUUUAAUGAA
.(((((((((...))))))----))).....((((.((((((((((..((.(((--.................------))).)))))))).)))).))))................... ( -19.13)
>DroSec_CAF1 20095 108 + 1
CAAAUGGAAGCUUCUUUCAA---UUUACAUUCUGCUCUUAUUGAUUCUGAUAU---CAUUUUUGUUUUGUUUU------GAUUUCGACCAAUUAAGUGCAGAAUUUUUCUAUUUAAUGAA
.(((((((((..........---.....(((((((.(((((((..((.((.((---((..............)------))).)))).))).)))).))))))).)))))))))...... ( -18.63)
>DroSim_CAF1 23257 107 + 1
CAAAUGGAAGCUUCUUUCA----UUUACAUUCUGCUCUUAUUGAUUCUGAUAU---CAUUUUUGUUUUGUUUU------GAUUUCGACCAAUUAAGUGCAGAAUUUUCCUAUUUAAUGAA
.(((((((((...))))))----)))..(((((((.(((((((..((.((.((---((..............)------))).)))).))).)))).)))))))................ ( -21.14)
>DroEre_CAF1 24707 96 + 1
------------------------UUAGGCCCUGCUCUUAUUCAUUCCGAUAGUGAUAUCUAUUUUUUGUUUUCCGACCAAUUUCGACCAAUUACGUGCAGAAUUUUCCUGUUUAAUGAA
------------------------.((((..((((.(...........((((....))))..............(((......))).........).))))......))))......... ( -11.50)
>DroAna_CAF1 23011 103 + 1
CAAAAGGAAAGUCCUUUGAAAAAUUUCCA------UAUCAUUAAAUAGGAAA-----AAUAGAGACUCACUUU------GAUUGCAUGCAAUUAUCAGGAGAGUUUUCCAAUUUAAUGAA
.....(((((.((....))....))))).------..(((((((((.((((.-----......(((((.((((------(((((....))))))..))).))))))))).))))))))). ( -25.41)
>consensus
CAAAUGGAAGCUUCUUUCA____UUUACAUCCUGCUCUUAUUGAUUCUGAUAU___CAUUUUUGUUUUGUUUU______GAUUUCGACCAAUUAAGUGCAGAAUUUUCCUAUUUAAUGAA
...............................((((.((((....................................................)))).))))................... ( -0.98 =  -2.58 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:54 2006