Locus 2523

Sequence ID X_DroMel_CAF1
Location 6,704,374 – 6,704,467
Length 93
Max. P 0.520895
window4121

overview

Window 1

Location 6,704,374 – 6,704,467
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -27.40
Consensus MFE -22.73
Energy contribution -22.73
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.83
SVM decision value -0.02
SVM RNA-class probability 0.520895
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6704374 93 - 22224390
AUCACCGGGGAUUUUCUAGAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCUCAGGAGAUUUUGGUUGACACCCCGUUAUACAUAG
.....(((((.((..(((((((((((((((((((..(............)..)))))))))))))).)))))..))..))))).......... ( -31.60)
>DroSec_CAF1 6857 91 - 1
AUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU--GGAGAUUUUGGUUGACACCCCGUUAUACAUAG
.....(((((.((..(((....((((.(((((((..(............)..)))))))--.))))...)))..))..))))).......... ( -25.30)
>DroSim_CAF1 8664 91 - 1
AUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU--GGAGAUUUUGGUUGACACCCCGUUAUACAUAG
.....(((((.((..(((....((((.(((((((..(............)..)))))))--.))))...)))..))..))))).......... ( -25.30)
>consensus
AUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU__GGAGAUUUUGGUUGACACCCCGUUAUACAUAG
.....(((((.((..(((.((((((..(((((((..(............)..)))))))..))))))..)))..))..))))).......... (-22.73 = -22.73 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:50 2006