Locus 2522

Sequence ID X_DroMel_CAF1
Location 6,699,513 – 6,699,606
Length 93
Max. P 0.737660
window4120

overview

Window 0

Location 6,699,513 – 6,699,606
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 67.01
Mean single sequence MFE -17.42
Consensus MFE -8.24
Energy contribution -10.20
Covariance contribution 1.96
Combinations/Pair 1.13
Mean z-score -1.72
Structure conservation index 0.47
SVM decision value 0.44
SVM RNA-class probability 0.737660
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6699513 93 - 22224390
-------AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAUCAAUCUAGCAAUAGAAAAAGAAGACGCUAGAGCGAACAGAAAUGGCUGGCGAAUUAAA
-------..............(((((((.((..............((((....)))).........(((....))).........)).)))))))..... ( -18.40)
>DroSec_CAF1 2209 93 - 1
-------AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAACAAUCUAGCAAGAGAAAAAGAAGACGCUAGAGCAAACAAAAAUGGCUGGCGAAUAAUA
-------..............(((((((.((..............((((((................))))))............)).)))))))..... ( -17.26)
>DroSim_CAF1 3464 93 - 1
-------AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAUCAAUCUAGCAAGAGAAAAAGAAGACGCUAGAGCAAACAAAAAUGGCUGGCGAAUUAAA
-------..............(((((((.((..............((((((................))))))............)).)))))))..... ( -17.26)
>DroEre_CAF1 4295 100 - 1
AGUAUGUACACUCCAUUCAUUUUUGCCACCCUUCCAAAAAAUCAAUCUUGCAAGAGAAAAAGAAGACGCUAGAGUAAACAAAAAUGGCUGGCGAAUUAAA
..........(.(((..((((((((..((.((.............((((....)))).............)).))...))))))))..))).)....... ( -13.57)
>DroMoj_CAF1 6525 93 - 1
-------GUUUGUAUUUUAAUGCUGGGGUGACUCUGCAAGAGAAGAGAAGAAGAAUUUCUUUCACCAUGAGGAAGAUAAAGGCCAGACCAAAGUAUAGAU
-------(((((((((((....(((((((((((((........))))(((((....)))))))))).(.....)........))))...))))))))))) ( -20.60)
>consensus
_______AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAUCAAUCUAGCAAGAGAAAAAGAAGACGCUAGAGCAAACAAAAAUGGCUGGCGAAUUAAA
.....................(((((((.((..............((((((................))))))............)).)))))))..... ( -8.24 = -10.20 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:49 2006