Locus 2519

Sequence ID X_DroMel_CAF1
Location 6,692,383 – 6,692,493
Length 110
Max. P 0.637761
window4117

overview

Window 7

Location 6,692,383 – 6,692,493
Length 110
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 76.97
Mean single sequence MFE -32.83
Consensus MFE -21.65
Energy contribution -20.32
Covariance contribution -1.33
Combinations/Pair 1.46
Mean z-score -1.25
Structure conservation index 0.66
SVM decision value 0.22
SVM RNA-class probability 0.637761
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6692383 110 + 22224390
UCUAAUUCACU-----UUCAAAUUCAGGACGACCUCGAUUGCGCUUCCAACUCGGGUCGCCAGCAAUCGGGCAUCAUCCAAGGUGUACACCUGAGCUUUCUGGCGGCCAACACAA
...........-----....((((.(((....))).))))..............(((((((((...(((((...(((.....)))....))))).....)))))))))....... ( -29.20)
>DroVir_CAF1 2724 106 + 1
UAUAAUGU-UC-----GCCA---ACAGGAUGAUUUGGAAUGUGCAUCCAAUAGUGGACGACAGCAGUCGGGCAUGAUUCAGGGCGUGCAUUUGAGUUUUCUGGCCGGCAACACCA
.....(((-(.-----(((.---.(((((.((((..((.((..(..(((((.(((..((((....))))..))).)))..))..)..))))..)))))))))...)))))))... ( -33.10)
>DroPse_CAF1 2701 111 + 1
ACUCAUUGGCUUCGUAUCCA----CAGGACGACCUGGACUGUGCCUCCAACUCGGGUCGCAACCAGUCUGGAAUCAUCCAGGGCGUCCACCUGAGCUUUAUGGCGGGCAACACCA
..((((.(((((.((....)----).(((((.((((((.((....(((((((.((.......))))).))))..)))))))).)))))....)))))..)))).((......)). ( -36.10)
>DroEre_CAF1 2518 110 + 1
UCAAAUUCACU-----UCCAAAUUCAGGACGACCUCGAUUGCGCUUCCAACUCCGGCCGCCAGCAAUCGGGCAUCAUCCAAGGCGUACACCUGAGCUUCCUGGCGGCCAAUACCA
...........-----....((((.(((....))).))))..............(((((((((...(((((......(....)......))))).....)))))))))....... ( -29.20)
>DroYak_CAF1 2533 110 + 1
UCUAAUUUACU-----GCCAAAUUCAGGACGACCUCGAUUGCGCUUCCAACUCGGGCCGCCAGCAAUCGGGCAUCAUCCAAGGUGUACACCUGAGCUUCCUGGCGGCCAACACCA
...........-----(((((.((.(((....))).))))).))..........(((((((((...(((((...(((.....)))....))))).....)))))))))....... ( -33.80)
>DroPer_CAF1 2721 111 + 1
ACUCAUUGGCUUCGUAUCCA----CAGGACGACCUGGACUGUGCCUCCAACUCGGGUCGCAACCAGUCUGGAAUCAUCCAGGGCGUCCACCUGAGCUUCAUGGCGGGCAAUACCA
..((((.(((((.((....)----).(((((.((((((.((....(((((((.((.......))))).))))..)))))))).)))))....)))))..)))).((......)). ( -35.60)
>consensus
UCUAAUUCACU_____UCCA___UCAGGACGACCUCGAUUGCGCUUCCAACUCGGGUCGCCAGCAAUCGGGCAUCAUCCAAGGCGUACACCUGAGCUUCCUGGCGGCCAACACCA
.................((.....(((((((.((((((((((((..((......))..))..)))))))((......)).))))))...)))).(((....)))))......... (-21.65 = -20.32 +  -1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:46 2006